Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M11
(1248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 30 3.3
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 30 3.3
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 29 5.8
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179 29 5.8
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 29 5.8
02_03_0037 + 14215616-14216941 29 5.8
11_03_0010 - 8922361-8922375,8923888-8924610 29 7.6
07_03_0213 - 15244299-15246311 29 7.6
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 29 7.6
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77... 29 7.6
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 30.3 bits (65), Expect = 3.3
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +2
Query: 272 NTAIRGLKTSVVCGTAKSSPAQPGYPSEDKILQIKHHRNDYA-EQYPSVTLILNKTMTEE 448
NTA K V + + AQ EDK +++K + ND +++ + I K E
Sbjct: 57 NTAGSACKKRVKASSLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICKKYELEN 116
Query: 449 SRLA-LEKWKQERIAEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPRSQ 595
+ +K K E+++ + N+ + + G K NT++ + T P +
Sbjct: 117 IEITNAKKQKAEKLSREMKNKCNK--KMPKSQGAKVLNTMRFFHTTPSKE 164
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 30.3 bits (65), Expect = 3.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 444 KSLGWLWRSGNKRGLPKWELKNLIDFTKLKWQ 539
K L + GN RG P W L+N I F L+W+
Sbjct: 230 KLLFGFYDHGN-RGFPGWALRNYIAFVSLRWK 260
>07_03_1263 +
25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 29.5 bits (63), Expect = 5.8
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 926 PPSSRPCTL*RAARRGP-SCACS*GRCRPHRSRRPAAPGCRRSGLSTSSAYQTSSTRLKS 750
PP+ P RA R G + A S G RP R A PG R L T + Q S +
Sbjct: 7 PPTPCPSHPARARRLGEWTAASSEGIGRPLSMHR-AVPGFLRRALITRNHPQASRFTSLA 65
Query: 749 VCLHNQQWHQKFPYTSVRG 693
CL+N HQ+ +++ G
Sbjct: 66 CCLNNLD-HQEPTQSTISG 83
>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
Length = 180
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 878 PSCACS*GRCRPHRSRRPAAP--GCRRSGLSTSS 783
PSC+ + RC PH+ P A G RR G ++ S
Sbjct: 51 PSCSTAGARCHPHQRHEPTAREWGRRRGGQASIS 84
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 887 RRGPSCACS*GRCRPHRSRRPAAPGCRRSGL 795
RR + C GR +PH + P PGCRR L
Sbjct: 300 RRAAARLC--GREQPHGAASPRLPGCRRDAL 328
>02_03_0037 + 14215616-14216941
Length = 441
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 1105 PDXEXFGXGAQPLRNSDXXSTPLPXSGLXGSXR 1007
P+ FG P+R D S PLP S + G+ +
Sbjct: 376 PERRSFGRRGSPVRGEDNGSRPLPESHVEGAWK 408
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 798 AIDFLGLSDFFHSIKVGLSS*SAMASKIPLYFSTGC 691
A+ L + D HSI GLS+ S +P +STGC
Sbjct: 173 ALQPLPVEDRLHSIHDGLSALFRDGSDVPAAYSTGC 208
>07_03_0213 - 15244299-15246311
Length = 670
Score = 29.1 bits (62), Expect = 7.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 878 VRDALLVIAYTDGSKADVFXLSTDKLREHWAQWLIRLEE 994
V D LL IA T S+ + L K R WAQW++ +E
Sbjct: 427 VLDKLLEIAST--SRVLEWDLGVGKFRGQWAQWVVEAKE 463
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 29.1 bits (62), Expect = 7.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 587 RSQLRIEKEVEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADY 739
RS + +GV SV + +I +PK +E + VHP L+ + DY
Sbjct: 239 RSLETVSHTFDGVLRSVLKLAANIINPKDLEFSTVHPCLENPDFWPHFNDY 289
>01_01_0102 +
769442-770159,770710-770805,771340-771363,771470-772542
Length = 636
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 848 RPHRSRRPAAPGCRRSGLSTSSAYQTSSTRLKSVCLH-NQQWHQKFPYT 705
+PH S + GC R + T+ T S+ + +Q W+ +PYT
Sbjct: 125 KPHTSEVASVVGCSRDSIDTNQYGIVGPTSCPSLANNASQFWYLAYPYT 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,165,274
Number of Sequences: 37544
Number of extensions: 554654
Number of successful extensions: 1531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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