Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M10
         (1270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   2e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   1.4  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    27   7.3  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   9.6  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +1

Query: 349 FGSLIIGYARNPSLKQQLFSYAILGFALSE 438
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 642 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 556
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 163 PVQSCRRWQTWLQGRSGLAARQAFCFEKV 77
           P +    W+TW+ G      R A  FEKV
Sbjct: 130 PKEKVTDWRTWVSGVKSFHMRDAPSFEKV 158


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 829 SFFYIVIEFCNVRALMLNMILIITVYKVRNRNNCSINIM-FTYNILLQIFVYT 674
           +FF + +  C +    +N  ++  +   RN  +CS+N   F + I+    VY+
Sbjct: 83  AFFSMCLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFFIIVAASNVYS 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,852,201
Number of Sequences: 5004
Number of extensions: 72702
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)