Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M09
         (1242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    31   0.44 
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   3.1  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   4.1  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   7.1  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 703 TRSLPAFLRPKPRPLSTEDDLQQLYAKVSLSKKYKNRMRNEHAAIIALSKSHSQFLXADA 882
           + S P  +RPK R + TE+  +   +K  +  K KN   +E + + ALS   S+   A+ 
Sbjct: 316 SNSKPVVVRPKKRNILTEELEKYKKSKKVVLGKRKNLENDEESTLRALSSFQSKIRNAED 375

Query: 883 VIVYDQR 903
             V D +
Sbjct: 376 EDVMDSQ 382


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 344 HTPPISQDNQTIITRPCKNISLSDTIAKSARACSLTVN 231
           H P ++Q+NQ++     +NIS++D   + A++   + +
Sbjct: 434 HAPTMTQENQSLHNESRENISINDITERMAQSTEFSTD 471


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 403 KSLDEQYLKENYTIKENHAYSNQDNYRMKHAEVQVQRVSRPASYAG 540
           K + E+ L++  T   N      +N R +  +V++Q   RP+SY G
Sbjct: 108 KFVSEKSLEKVSTADNNLVLQELENLRERLNQVELQLSERPSSYLG 153


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 331 IGGVCGVFILLVIICYCRLMPRHQKSLDEQ 420
           I GV G  I+LVII YC    + +K L EQ
Sbjct: 102 IVGVLGGLIVLVIIFYCLRHFKRKKFLAEQ 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,182
Number of Sequences: 5004
Number of extensions: 57806
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)