Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M09
         (1242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47812-4|CAA87791.1|  436|Caenorhabditis elegans Hypothetical pr...    30   3.0  
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    29   6.8  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>Z47812-4|CAA87791.1|  436|Caenorhabditis elegans Hypothetical
           protein T05H10.4 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 733 KPRPLSTEDDLQQLYAKVSLSKKYKNRMRNEHAAIIALSKSHSQ 864
           KP  ++   D  Q      LS +++ + +  HAAI+A +++H+Q
Sbjct: 375 KPLAMNPSPDFFQFLQNQKLSHEHEQQQQQLHAAILAQAQAHAQ 418


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = +1

Query: 394 RHQKSLDEQYLKENYTIKENHAYSNQDNYRMKHAEVQVQRVSRPASY 534
           +HQ S  + Y   NY   + H +  Q   +  H + Q  +  +   Y
Sbjct: 27  QHQPSYPQNYQNHNYNAHQQHYHQQQQQQQHAHQQKQASQQQQQQQY 73


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 777 REGESQQEVQEQNEKRTRRDNSSQQVPQ 860
           R+ E QQ+ Q+Q +++ +R  + QQ PQ
Sbjct: 293 RQREQQQQQQQQQQQQQQRQQNPQQQPQ 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,788,061
Number of Sequences: 27780
Number of extensions: 348017
Number of successful extensions: 1113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)