Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M07
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...   203   4e-53
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    30   0.78 
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   4.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   7.3  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   9.7  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score =  203 bits (496), Expect = 4e-53
 Identities = 115/300 (38%), Positives = 154/300 (51%), Gaps = 20/300 (6%)
 Frame = +1

Query: 94  EFKSTEHQHIRSNPLKAXWVLVSPHRCLRPWSG--QTXXXXXXXXXXXXXXLRAGALRSS 267
           +F  TE+ H R NPL   +VL SPHR  RPW G  +               L  G +R++
Sbjct: 5   KFDFTEYSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNIRAT 64

Query: 268 GKRNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXX----------FQSAPAKGTCRVMCFH 417
           G  NP Y +TYVFPND+                           F++   KG C V+CF 
Sbjct: 65  GFENPKYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKTEGVKGKCFVICFC 124

Query: 418 PDSTMTIPLMKXXXXXXXXXXWINQLNELGQ-------RYTWVQIFENKGAIMGCSNPHP 576
           P+  +T+PLM           W +    L +       RY ++QIFENKG+ MGCSNPHP
Sbjct: 125 PNHNLTLPLMSAEAICNVVETWKHLYVTLKKESLEGPIRYKYLQIFENKGSAMGCSNPHP 184

Query: 577 HCQIWASSFLPNEPRIKDRCQSEYYAKYGNS-LLVDYLKQELKLKERIVLKNSEWVAIVP 753
           H Q W    +P+    ++ C    Y +  NS LL DY+K E+  KERIV++N  ++ +VP
Sbjct: 185 HGQAWCLDVIPSVVA-QEMCNMTKYFELNNSHLLGDYVKLEMLEKERIVVENDSFIVVVP 243

Query: 754 YWAVWPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNWFECSFPYSMGWHGA 933
           YWA+WP+ET+L+      + L +    QK  LA  +K L TKYDN F  SFPYSMG H A
Sbjct: 244 YWALWPFETLLIAKEHL-KSLEEFEEKQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQA 302


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 598 SFLPNEPR---IKDRCQSEYYAKYGNSLLVDYLKQEL-KLKERI 717
           SF  + P    IKDRC + Y AK  ++LLV ++++ L  +K R+
Sbjct: 291 SFFEHHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERLPDIKARL 334


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 739 PILNFLTLS-SPSILILVSNNRQAESFRILHNIR 641
           P+ +F++LS SP+ LI +  N  A  F  + N+R
Sbjct: 757 PLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVR 790


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 769 AKPPSTGLSPPILNFLTLSSPSILILVSNNRQAESFRILHNIRF 638
           +KPPS    PP     + SSP      S +R A+S   LH++ F
Sbjct: 130 SKPPSL---PPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGF 170


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 631 YP*SWARSVRSWTPIFDSEDAD 566
           YP +    ++ WTP+ D+E+AD
Sbjct: 107 YPENPLCFIKQWTPVIDAENAD 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,964,033
Number of Sequences: 5004
Number of extensions: 77583
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)