Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M07
(1272 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 54 2e-07
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784... 33 0.48
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 31 1.5
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333 31 1.9
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 31 1.9
03_06_0039 + 31235840-31236214,31237057-31237674 30 3.4
03_06_0577 - 34842951-34843057,34843472-34843661,34843748-348438... 29 5.9
02_05_0704 - 31064996-31065214,31065306-31065466,31065583-310656... 29 5.9
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 29 7.8
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 54.4 bits (125), Expect = 2e-07
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Frame = +1
Query: 529 IFENKGAIMGCSNPHPHCQIWASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLK 708
+F+N GA G S H H Q+ + F+P + C E + + G L ++ +++ ++
Sbjct: 212 VFKNHGASAGASMAHSHSQMLGTPFVPPSVTTRLNCMKEVFERLGKCSLCEFQSKDILVR 271
Query: 709 ERIVLKNSEWVAIVPYWAVWPYETMLLPLNGA-------PQRLTDLNPAQKKGLAEIMKQ 867
E + AIVP+ A +P+E ++P + DL + LA++ KQ
Sbjct: 272 E-----THNFSAIVPFAASYPFEIWIIPRQHSSYFHEIDKDTALDLGSLLRTMLAKLSKQ 326
Query: 868 LNTKYDNWFECSFPYSM 918
LN N+ S P+ +
Sbjct: 327 LNDPPFNFMIHSAPFGV 343
>08_02_0575 -
18876988-18877029,18877072-18877102,18878290-18878418,
18878512-18879154,18882042-18883990,18884964-18885040
Length = 956
Score = 33.1 bits (72), Expect = 0.48
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 929 PCHPMLYGKLHSNQLSYFVFNCFMISAKPFFWAGFKSVSRCGAPFNGNSI 780
P P+++ K + L YF F C +S+ F ++ R FNG+++
Sbjct: 564 PAEPIIFDKSGFHVLKYFKFKCSTVSSLRFDEGAMPNLQRLKMEFNGSTV 613
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 769 PYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNWFECSFPYSMGW 924
PY LLPL+ Q L D + ++N +Y +W C P+ W
Sbjct: 121 PYHASLLPLHSRQQALLD-------AFNLLTNRMNFRYASWISCELPHRTEW 165
>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
Length = 1061
Score = 31.1 bits (67), Expect = 1.9
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 748 VPYWAVWPYETMLLPLNGAPQRLTDLNPAQKKGLAEIMKQLNTKYDNWF 894
+P A WP E +LLP+ +PA++ G+++++ +L + ++F
Sbjct: 1007 LPRSATWPNEGLLLPIFELGLMCCSSSPAERMGISDVVVKLKSIRKDYF 1055
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 263 PVESVTQTTHPHTCSRMTSQRFSRMCQSLQN 355
P+ES+T+ CSR TSQ FS M + L+N
Sbjct: 355 PIESITKQDAAG-CSRSTSQNFSSMVEDLRN 384
>03_06_0039 + 31235840-31236214,31237057-31237674
Length = 330
Score = 30.3 bits (65), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 589 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVD 681
WA S L N P+I + ++E A GNS L++
Sbjct: 141 WAMSLLLNHPKILKKAKAEIDASVGNSRLIN 171
>03_06_0577 -
34842951-34843057,34843472-34843661,34843748-34843829,
34844587-34844768
Length = 186
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 287 THPHTCSRMTSQRFSRMCQSLQNRNTHCSNLHRPK 391
+ P C R + +F C SL+NRN S H+P+
Sbjct: 21 SRPDICKRNSHLKF---CYSLRNRNVFVSKTHKPR 52
>02_05_0704 -
31064996-31065214,31065306-31065466,31065583-31065660,
31066560-31066651,31066775-31066833,31066924-31067010,
31067118-31067214,31067311-31067495,31067593-31067665,
31067725-31067805,31067948-31068048,31068133-31068246,
31068391-31068488,31069789-31069915
Length = 523
Score = 29.5 bits (63), Expect = 5.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 878 FVFNCFMISAKPFFWAGFKSVSRCGAPFNGNSIVS*GQTAQYGTIATHSEFFNTILSFNF 699
F+ C + S + F GF P N S A YG + THS +FN I++ F
Sbjct: 404 FLQFCNLNSFRTKFILGFSVFMGLSVPQYFNEYTS---VAGYGPVHTHSRWFNDIVNVIF 460
Query: 698 NS 693
+S
Sbjct: 461 SS 462
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 29.1 bits (62), Expect = 7.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 520 WVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPRI 624
+++ E ++ C PHPH ASS + N+ +I
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKI 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,393,347
Number of Sequences: 37544
Number of extensions: 522015
Number of successful extensions: 1384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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