Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M07
         (1272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...   259   3e-69
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    31   1.3  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    31   1.3  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    31   1.3  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    30   4.0  

>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score =  259 bits (635), Expect = 3e-69
 Identities = 126/284 (44%), Positives = 163/284 (57%), Gaps = 7/284 (2%)
 Frame = +1

Query: 103 STEHQHIRSNPLKAXWVLVSPHRCLRPWSGQ------TXXXXXXXXXXXXXXLRAGALRS 264
           S ++   R NPL   WV+V+ +R  RPW G       T              L  G  RS
Sbjct: 2   SKQNNFRRYNPLIDEWVIVAVNRINRPWQGAKTEKSTTISTSSNTEQSILNPLAPGGTRS 61

Query: 265 SGKRNPDYTSTYVFPNDFXXXXXXXXXXXXXXXXX-FQSAPAKGTCRVMCFHPDSTMTIP 441
           SG  N +Y STYVF NDF                  F+    KG C+V+C+HP+S +T+ 
Sbjct: 62  SGIANENYVSTYVFDNDFPSFTEFEECAGKDENDDLFKQHEVKGVCKVICYHPNSQLTLA 121

Query: 442 LMKXXXXXXXXXXWINQLNELGQRYTWVQIFENKGAIMGCSNPHPHCQIWASSFLPNEPR 621
            M           W  Q  ELG +Y WVQIFEN+GA++GCSN HPH Q+WAS++LP  P 
Sbjct: 122 TMDVKEVRVVIDIWNQQYLELGPKYEWVQIFENRGAVVGCSNMHPHGQLWASNYLPTLPM 181

Query: 622 IKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVWPYETMLLPLNG 801
            K   Q +++ K+G  +L+DYL+QE   KERI+++N  W  +VPYWA WPYETMLLP N 
Sbjct: 182 KKHESQKKHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFWPYETMLLP-NR 240

Query: 802 APQRLTDLNPAQKKGLAEIMKQLNTKYDNWFECSFPYSMGWHGA 933
             +R TDL   +K+ L+EI++ L  KYDN FECSFPY MGW GA
Sbjct: 241 HVERFTDLGEVEKQSLSEILRSLLIKYDNVFECSFPYMMGWSGA 284


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 589 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 768
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 370 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 427

Query: 769 PYETM 783
           P++T+
Sbjct: 428 PHKTI 432


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 589 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 768
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 385 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 442

Query: 769 PYETM 783
           P++T+
Sbjct: 443 PHKTI 447


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 589 WASSFLPNEPRIKDRCQSEYYAKYGNSLLVDYLKQELKLKERIVLKNSEWVAIVPYWAVW 768
           W   +L N P ++ +CQ E    +GN  + D  K       R  L   + +A V  WA+ 
Sbjct: 370 WGIIYLLNNPEVQAKCQMEILDVFGND-IPDMGKMNQTPYVRATLSEIQRLANVLPWAI- 427

Query: 769 PYETM 783
           P++T+
Sbjct: 428 PHKTI 432


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 562 SNPHPHCQIWASSFLPN--EPRIKDRCQSEYYAKYGNSLLVDYLKQ-ELKLKERIVLKNS 732
           S P P C   AS  +P+    +I+D+ + +  A  G+ ++V+  KQ E  + ER++  NS
Sbjct: 309 SAPIPRCL--ASCRVPHIQNGKIRDKSEGQLIAS-GSKVIVECNKQHEANIDERLICSNS 365

Query: 733 EW 738
            W
Sbjct: 366 TW 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,686
Number of Sequences: 27780
Number of extensions: 438068
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)