Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M06
         (1267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    29   1.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   4.2  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   9.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   9.6  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 630 VFARIIKIFPDIAYFYSYFSQLFSELSCVFFHWWTI 737
           +  +I+   P +AYF+SY++Q F +    F + WT+
Sbjct: 218 IIVQILFSIPFLAYFWSYWTQAF-DFGRAFDYKWTV 252


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 288 SKLHFWICLFTY------ESYIFTYFSLIFSIITELFA 383
           SK+ ++ C   Y      +  +F YF+LIF ++ +LFA
Sbjct: 100 SKIRYYACESMYNIGKVAKGEVFRYFNLIFDVLCKLFA 137


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 309 CLFTYESYIFTYFSLIFSIITELFAVFSKLFTLVTELFSYFALCGW 446
           C+++Y +   T+ S +FS+  E       +   V+ L     LCG+
Sbjct: 138 CVYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGY 183


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 210  LFALVTXXFTK*SCLQSYFIKLFAFVSKLHFWICLFTYESYIFTYFSLIFSIITELFA-- 383
            +F  +   ++  + L+ YF  +F   S L  +   F+Y+   F++ + I SI   + A  
Sbjct: 3485 MFENIQKLYSPSTILKDYFSSIFTNYSDLWLFRKNFSYQYACFSFITYILSINNRIPAKL 3544

Query: 384  VFSK 395
            VFS+
Sbjct: 3545 VFSR 3548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,720
Number of Sequences: 5004
Number of extensions: 42645
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)