Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M04
         (1355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.013
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.013
 Identities = 27/86 (31%), Positives = 27/86 (31%)
 Frame = +1

Query: 433 GGGGGXFFXXXKNPXPXGXGGXXXGAXXXXPXKKTXXXGFGGGGGXFXXXXGGXXXXPKX 612
           GGG G F      P P   G    G             GFGGG G F    GG    P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-- 244

Query: 613 GGXXXKXFXXXGXXXGQXXKRGGXGG 690
           GG         G   G     GG GG
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 31.1 bits (67), Expect = 0.37
 Identities = 18/52 (34%), Positives = 18/52 (34%)
 Frame = +1

Query: 547 GFGGGGGXFXXXXGGXXXXPKXGGXXXKXFXXXGXXXGQXXKRGGXGGFXXG 702
           GFGGG G      GG       GG         G   G     GG GGF  G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
 Frame = -1

Query: 692 NPPXPPLXXFXPXXXPXXXXFFXXXPPXFGXXXXPPXXXXKX--PPPPPKPXXXVFFXGX 519
           +PP PP     P   P         P   G    PP        PPPPP P   V   G 
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790

Query: 518 XXXAP 504
              AP
Sbjct: 791 RYYAP 795



 Score = 30.3 bits (65), Expect = 0.64
 Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
 Frame = -2

Query: 700 LXKTPPXPPFXXFXPFXXPXXXXFXPGXPPXLG--XXXXPPXXXXKXXPPPQNPGXXFFX 527
           L K+PP PP     P   P      P  P   G      PP       PPP  P      
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787

Query: 526 GGXR 515
           GG R
Sbjct: 788 GGSR 791



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 952 PPXGGXPPPPXXXXPPXGXXKXPPXPP 872
           P  GG PPPP    PP      PP PP
Sbjct: 756 PIMGGPPPPP---PPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 949 PXGGXPPPPXXXXPPXGXXKXPPXPP 872
           P  G PPPP       G    PP PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 31/152 (20%), Positives = 35/152 (23%), Gaps = 1/152 (0%)
 Frame = -3

Query: 1005 PXXXXPPXXXXGGFXXXPPXXGGXPPPXXXKXPXXXXKKXPPXPXXXKXXXXXXXXPXXX 826
            P    PP     G    PP     PPP   +      ++ PP              P   
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 825  XXXXPXGXFXGGNPXXFXXPXGXPPPXXXXXFFXXFFXGGGPXXKPPPXPPFXXL-XXXX 649
                P     G        P   PP                P   PP  PP   +     
Sbjct: 397  GRSAPALPPLGNASRTSTPPVPTPPS----------LPPSAPPSLPPSAPPSLPMGAPAA 446

Query: 648  PXXXKXFXXVXPXFWXXPXXPPXGXKXPXPPP 553
            P          P     P  PP     P PPP
Sbjct: 447  PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 952  PPXGGXPPPPXXXXPPXGXXKXPPXP 875
            PP    PPPP     P G    PP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -2

Query: 952 PPXGGXPPPPXXXXPPXGXXKXPPXPPXXK 863
           PP    PPPP     P      PP P   K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,379
Number of Sequences: 5004
Number of extensions: 35515
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)