Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M04
         (1355 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   1.2  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   6.7  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 33/117 (28%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
 Frame = -2

Query: 814 PPGGFXXGXPXXFXXPXGXSPPPXXXXXFFXFFXGGGXLXKTPPX---PPFXXFX-PFXX 647
           PP G           P G  PPP            GG +   PP    PP      PF  
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPPPPPP----------GGAVLNIPPQFLPPPLNLLRAPFFP 561

Query: 646 --PXXXXFXPGXPPXLGXXXXPPXXXXKXXPPPQNPGXXFFXGGXRXGPXKXXPXXP 482
             P    F  G P  L     PP       PPP  P      GG   GP    P  P
Sbjct: 562 LNPAQLRFPAGFP-NLPNAQPPPAPPP---PPPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 708 GGPXXKPPPXPP 673
           GGP   PPP PP
Sbjct: 525 GGPLGPPPPPPP 536



 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 261 PXXPPPXGXPPPP 223
           P  PPP G PP P
Sbjct: 585 PPPPPPMGPPPSP 597


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 226 GGGXPXGGGG-XGAPXXKXXXGXXG 297
           GGG P GGGG  G P      G  G
Sbjct: 208 GGGAPGGGGGSSGGPGPGGGGGGGG 232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,037
Number of Sequences: 2352
Number of extensions: 14372
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 156055680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)