Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M03
         (1234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         29   5.7  
04_01_0486 - 6404315-6404333,6404803-6405260                           29   7.5  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -1

Query: 856 NGGXVHTAQLGAXDLHRXEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXRGKR 677
           NGG     ++ A    +   P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136


>04_01_0486 - 6404315-6404333,6404803-6405260
          Length = 158

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 751 KGGQVSGK-RQGRNRRAHEGAXRGKRLVXL*SCRVSPPXT*ASIFVMLVRGAEPMEKRQQ 575
           +GG   G+ R+GR R A  G  R +         VSPP     +  +   G     +R +
Sbjct: 53  RGGASGGRGRRGRQRAAQGGGGRQRARGGGEVAVVSPPGRSPPLRQIWQEGRRRQGRRAR 112

Query: 574 RGLFTVXGLLLAFC 533
           RGL    G L+  C
Sbjct: 113 RGLVVAGGGLVRRC 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,044,295
Number of Sequences: 37544
Number of extensions: 384250
Number of successful extensions: 850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)