Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M01
         (1204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    26   9.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   9.1  

>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 347 MEIDKWHMQKELGINPRFSKFSQIQR*QPGSSRPKKLTSLGSQQ 478
           ME+D +  + ELG +  F+           +S+P  L  L SQ+
Sbjct: 188 MELDDFAKELELGFDQEFNSIDDPSTVSQTASKPISLRGLSSQE 231


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 850  SQLSVSKLLNYKLIAWNKISSSFKINNKMHNFKYKDFYC--VCRLLGKLKSI 701
            + L V + L+ +   W K   +++I        YK++ C  +CR + K +++
Sbjct: 925  ANLIVDQSLDTQRRVWKKYVQNYRIQKLTEEISYKNYRCPFLCRNIEKERTV 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,506,123
Number of Sequences: 5004
Number of extensions: 91321
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)