Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M01
(1204 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0180 - 23027979-23028092,23028180-23028255,23028342-230284... 34 0.26
11_05_0036 - 18514964-18515042,18515268-18515385,18515820-185158... 31 2.4
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949... 30 3.2
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 30 3.2
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975... 29 5.5
03_05_1159 + 30822397-30822862,30823228-30823814 29 5.5
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269... 29 5.5
>05_05_0180 -
23027979-23028092,23028180-23028255,23028342-23028433,
23028689-23028790,23028865-23029138,23029203-23029503,
23029639-23029870,23029955-23030011,23030103-23030261,
23030356-23031192,23031383-23031437,23032103-23032158
Length = 784
Score = 33.9 bits (74), Expect = 0.26
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Frame = +3
Query: 411 PKFRDDSLAPHGLKSLHHLALNKAIYAQDWDK-----LLYILKKIPPWKFKFSRPSHAAV 575
P F+DDSL P+ + S H + A DWD+ + IP + H
Sbjct: 674 PSFKDDSLIPYDVPSCHLECMKLAF--PDWDEDIPNWVSEFPSAIPAINNRLECAFHVLY 731
Query: 576 YYRAMT-ILLLNHPTAQANSLMNEFLHMVLSCRSD 677
Y R L+N P + L EFL +LS + +
Sbjct: 732 YMRNWDGTRLVNPPKSDQRDLRKEFLSNLLSFKGN 766
>11_05_0036 -
18514964-18515042,18515268-18515385,18515820-18515878,
18516006-18516205
Length = 151
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 216 YLCAETGYIPSERTMLDKELLDKCYFIP 299
Y+C + GYI S+RT DK L DK YF P
Sbjct: 61 YICRDCGYIYSDRTPFDK-LPDK-YFCP 86
>07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,
9493623-9493898,9493976-9494039,9498048-9498113,
9498283-9498413,9499722-9499859,9499964-9500079,
9500166-9500331,9500435-9500548,9500609-9500692,
9500995-9501073,9501134-9501337,9501999-9502096,
9502187-9502284,9502359-9502495,9502606-9502824,
9503541-9503743,9503856-9504005
Length = 881
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Frame = +3
Query: 192 HLVTYAFTYLCAETGYIPSERTMLDKELLDKCYFIPKDVMLKVLAM----LESSTPWKST 359
H Y F Y+ A G I + R LLD+ F+P DV VL++ S+T
Sbjct: 766 HPRQYDF-YMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVV 824
Query: 360 SGICRRNLASIQ--GFRSSPKFRDDSLAPHGLKS 455
+ IC +LA+ Q F +F + S G+ S
Sbjct: 825 APICYAHLAAAQMGQFMKFEEFAETSSGSGGVPS 858
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 30.3 bits (65), Expect = 3.2
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 306 VMLKVLAMLESSTPWKSTSGICRRNLASIQGFRSSPKFRDDSLAPHGLKSLHHL-ALNKA 482
V L V+A L SS+PW +++ C + RSS R D ++ L L+ L+ +
Sbjct: 197 VSLMVMAALRSSSPWSASA--CSHGFFWMSQ-RSSEDARLDDISGDTLLGLYEKERLSHS 253
Query: 483 IYA-QDWDKLLY 515
+YA +D+DK ++
Sbjct: 254 LYANEDYDKEMF 265
>08_01_0966 +
9751198-9751530,9752182-9752337,9753145-9753240,
9753599-9753719,9754027-9754196
Length = 291
Score = 29.5 bits (63), Expect = 5.5
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Frame = +3
Query: 219 LCAETGYIPS--ERTMLDKELLDKCYFIPKDVMLKVLAMLESSTPWKSTSGICRRNLASI 392
LC+ ++ ER ++ L++C ++P ++ K + ESS S +C
Sbjct: 158 LCSTCKFVEDGEERVVVGSLDLNQCLWLPDELTGKRPGVNESSHTRAYLSNVCVAKELQR 217
Query: 393 QGFRSSPKFRDDSLAPH-GLKSLH-HLALNKAIYAQDWDKLLYILK-KIPPWKFKF-SRP 560
G + + LA G+ L+ H+A+N + ++K ++ + + P WK +F RP
Sbjct: 218 NGLGYALVDKSKKLAREWGITDLYVHVAINNEAAQKLYNKCGFVYESEEPAWKARFLGRP 277
>03_05_1159 + 30822397-30822862,30823228-30823814
Length = 350
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 333 ESSTPWKSTSGICR----RNLASIQGFRSSPKFRDDSLAPHGLKSLHHLALNKAIY 488
ESS P++ G CR R ASI+GF+ P + +L + +A+N A Y
Sbjct: 219 ESSYPYRGVDGACRAAAGRAAASIRGFQDVPSNDEGALMAAVARQPVSVAINGAGY 274
>01_05_0318 -
20826377-20826571,20826663-20826764,20826839-20826973,
20827924-20828016,20828072-20828230,20828325-20828929,
20829098-20829119,20829339-20829393,20829426-20829466,
20830250-20830363
Length = 506
Score = 29.5 bits (63), Expect = 5.5
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Frame = +3
Query: 411 PKFRDDSLAPHGLKSLHHL------ALNKAIYAQDWDKL-LYIL 521
P F+DDSL P+ + S H + L+ ++YA D +K LYIL
Sbjct: 425 PSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAFDMEKTKLYIL 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,891,071
Number of Sequences: 37544
Number of extensions: 507568
Number of successful extensions: 1095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -