Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M01
         (1204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    30   3.7  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    29   8.7  

>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical protein
            T02D1.3 protein.
          Length = 322

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 1066 VFIQFGDLYIXYTSHINNIPLLTMYIXSFVFTIVYCNCNNYIKLR 932
            V  QFG +Y+ + ++  N+ L    + + +F +  C   N I  R
Sbjct: 183  VLYQFGHIYVFFINNWFNVKLDNFLVPNAIFWLFLCTITNVISYR 227


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 183 F*ILAKIVRFSIIHYDNSLKLCISFTV*YGLYIYFVYILILCKD 52
           F  L  + RF+I  + +S K+ + F      +I F Y L++ KD
Sbjct: 129 FTFLMAVERFTIYFFPSSEKIVLKFQTYVTKHIKFAYCLLIVKD 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,462,455
Number of Sequences: 27780
Number of extensions: 492981
Number of successful extensions: 1007
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3307723186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)