Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L24
(1216 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 245 2e-63
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 111 3e-23
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 103 9e-21
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 93 2e-17
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 93 2e-17
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 85 3e-15
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 74 7e-12
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 73 2e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 2e-08
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 52 4e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 50 1e-04
UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 42 0.032
UniRef50_UPI0000EBD39C Cluster: PREDICTED: hypothetical protein;... 42 0.043
UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3; ... 41 0.074
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 40 0.13
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.13
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 39 0.23
UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella ve... 36 2.8
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 34 6.5
UniRef50_A6LZB2 Cluster: FMN-binding domain protein precursor; n... 34 8.5
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 245 bits (599), Expect = 2e-63
Identities = 114/126 (90%), Positives = 115/126 (91%)
Frame = +2
Query: 473 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLXAPSCALLFRP 652
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDT RFPL APSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 653 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSP 832
CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSP
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSP 121
Query: 833 TRXDTT 850
TR DTT
Sbjct: 122 TRKDTT 127
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 111 bits (268), Expect = 3e-23
Identities = 68/120 (56%), Positives = 72/120 (60%)
Frame = +2
Query: 305 RGEAVCVLGALPLPRSLTRCARSFGCGEXXXXXXXXXXXXXXNXGITQERTCXQKASKRP 484
R +C G +PLPRSLTR ARSFGCGE G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGE--------RYRLTDGDGNFLEDT-RKTLSKEE 76
Query: 485 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLXAPSCALLFRPCRLP 664
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RFPL APSCALLF P LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 103 bits (247), Expect = 9e-21
Identities = 50/78 (64%), Positives = 58/78 (74%)
Frame = -1
Query: 847 RVXPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTG 668
RV PGWTQDDSYR RS RAERGVRA+SPAWSERP P+ DT SVSYEKAPRFPKG++
Sbjct: 5 RVRPGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ 64
Query: 667 IR*AAGSEQESARGSXQG 614
+ +G Q R + +G
Sbjct: 65 V---SGKRQGRNRRAHEG 79
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = -2
Query: 684 EKGGQVSGKRQGRNRRAHEGAXRGKRXVSL*SCRVSPPLT 565
+K QVSGKRQGRNRRAHEGA K SL PPLT
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 92.7 bits (220), Expect = 2e-17
Identities = 50/94 (53%), Positives = 53/94 (56%)
Frame = +2
Query: 566 VRGGETRQDYKDTXRFPLXAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCR 745
VR GETRQD K P P PPFSL + + GIS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 746 SFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDT 847
SFAPSWAV NPPFSPTAAPYPVT+ LSPTR T
Sbjct: 83 SFAPSWAVSKNPPFSPTAAPYPVTVHLSPTRKST 116
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 92.7 bits (220), Expect = 2e-17
Identities = 44/54 (81%), Positives = 46/54 (85%)
Frame = +2
Query: 491 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLXAPSCALLFRP 652
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDT RFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 85.4 bits (202), Expect = 3e-15
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = -1
Query: 853 ISRVXPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN 734
+ R PGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN
Sbjct: 3 LRRALPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN 42
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein
- Escherichia coli
Length = 84
Score = 74.1 bits (174), Expect = 7e-12
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = +1
Query: 769 VHEPPVQPDRCALSGNYRLESNPVXHDLSXLAASTG 876
+HEPPVQPDRCALSGNYRLESNPV HDLS LAA+TG
Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATG 36
Score = 67.7 bits (158), Expect = 6e-10
Identities = 29/46 (63%), Positives = 31/46 (67%)
Frame = +2
Query: 878 NRIXRARYVGGATXFWXWWPNXGYXKXTXXGICXLXXPXTXXKKVG 1015
NRI RARYVGGAT F WWPN GY + T GIC L P T K+VG
Sbjct: 37 NRISRARYVGGATEFLKWWPNYGYTRRTVFGICALLKPVTFGKRVG 82
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 72.5 bits (170), Expect = 2e-11
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = -1
Query: 847 RVXPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DT 725
R PGWTQ +SYRIRRS RAERGV A+SPAWSERPTP+ DT
Sbjct: 5 RAFPGWTQVNSYRIRRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 2e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -1
Query: 481 PFAGLLLTCSFLRYPXILWITVLPPLSELIPLAAAERP 368
P LLTCSF YP ILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 56.4 bits (130), Expect = 1e-06
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 664 GYLSAFLPSGSVALSHSSRCRYLSSV 741
GYLSAFLPSGSVALSHSSRCRYLSSV
Sbjct: 12 GYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 51.6 bits (118), Expect = 4e-05
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = +2
Query: 431 NXGITQERTCXQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXR 610
N I +R + + + P T F S PLT+ITKI Q + +T+ +YK T
Sbjct: 41 NHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTP 100
Query: 611 FPLXAPSCALLFRP 652
FPL +PS +LLF P
Sbjct: 101 FPLQSPSYSLLFPP 114
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 50.0 bits (114), Expect = 1e-04
Identities = 24/35 (68%), Positives = 25/35 (71%)
Frame = +2
Query: 281 CINESANARGEAVCVLGALPLPRSLTRCARSFGCG 385
CI + A AR EAV VL ALPL RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300
>UniRef50_A4LA78 Cluster: Putative uncharacterized protein; n=1;
Edwardsiella tarda|Rep: Putative uncharacterized protein
- Edwardsiella tarda
Length = 99
Score = 49.2 bits (112), Expect = 2e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 770 CTNPPFSPTAAPYPVTIVLSPTRXDTTYRHWQ 865
CTN PFSPT P VT++L+PT DT RHW+
Sbjct: 68 CTNSPFSPTITPVQVTVLLNPTLTDTQKRHWR 99
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.9 bits (94), Expect = 0.032
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 273 VXSALMNRPTRGERRFAYW 329
V +ALMNRPTRGERRFAYW
Sbjct: 23 VPAALMNRPTRGERRFAYW 41
>UniRef50_UPI0000EBD39C Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 198
Score = 41.5 bits (93), Expect = 0.043
Identities = 30/98 (30%), Positives = 38/98 (38%)
Frame = -1
Query: 961 CXFXVAXVRPPXPEXCSXAYIPRSXNPVXQWMLPVXISRVXPGWTQDDSYRIRRSGRAER 782
C A P P A PR PV LP GW + + + R GR +R
Sbjct: 102 CWLLRAVPARPAPALARAAPQPRRP-PVPAPTLPTGALGGAGGWPRAEVVEVGRLGRGQR 160
Query: 781 GVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTG 668
R +PAW P D+ V+ + PR P RR G
Sbjct: 161 ARRRDAPAWVRPREPRSDSSPVT-GRGPRAPSPTRRPG 197
>UniRef50_Q51612 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Plasmid
ColE1
Length = 96
Score = 40.7 bits (91), Expect = 0.074
Identities = 22/50 (44%), Positives = 22/50 (44%)
Frame = -1
Query: 1060 KXPXTXGGXXAXSXXTNFFXXXXWXXQXADTXXCXFXVAXVRPPXPEXCS 911
K T GG A S TN F W Q ADT C VA V P E CS
Sbjct: 16 KTTATNGGLFAGSRATNSFSEGNWLQQSADTKYCPSSVAVVGPLLQELCS 65
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 39.9 bits (89), Expect = 0.13
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 84 DPDMIRYIDXXGQTTTRMQ 140
DPDMIRYID GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.13
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 351 ERGSGRAPNTQTASPRALADSLMQ 280
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 39.1 bits (87), Expect = 0.23
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 400 HSKAVIXLSTESXDNAGKNM 459
HSKAVI LSTES DNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1107
Score = 35.5 bits (78), Expect = 2.8
Identities = 29/82 (35%), Positives = 36/82 (43%)
Frame = +2
Query: 566 VRGGETRQDYKDTXRFPLXAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCR 745
+RG T Q D R P +CA RP R D C ++ WR HAVG
Sbjct: 638 LRGPATGQAVVDPGRMPRPV-TCA--GRPTRGLDLCGLATVSWVWRSTKCHAVG------ 688
Query: 746 SFAPSWAVCTNPPFSPTAAPYP 811
++P + CT P S APYP
Sbjct: 689 KYSPP-STCTRRPKSQRDAPYP 709
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.3 bits (75), Expect = 6.5
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -2
Query: 711 MRKRHASRREKGGQVSGKRQGRNRRAHEGAXRGKR 607
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
>UniRef50_A6LZB2 Cluster: FMN-binding domain protein precursor; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: FMN-binding
domain protein precursor - Clostridium beijerinckii
NCIMB 8052
Length = 364
Score = 33.9 bits (74), Expect = 8.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 126 TTRMQ*KKCFXCEXCD-AIALFVTIISCNKQVNNNNCIH 239
T + C C+ CD A + + I +CNK VN+ NCI+
Sbjct: 167 TIKRDANSCINCKRCDKACDMNIKISTCNKTVNSLNCIN 205
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,799,647
Number of Sequences: 1657284
Number of extensions: 15706421
Number of successful extensions: 41563
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 39428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41520
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 122791400986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -