Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L24
(1216 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107864-1|AAI07865.1| 385|Homo sapiens ZC3H13 protein protein. 31 8.4
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 31 8.4
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 31 8.4
BC032425-1|AAH32425.1| 469|Homo sapiens ZC3H13 protein protein. 31 8.4
AY283618-1|AAP37483.1| 1564|Homo sapiens hypothetical protein pr... 31 8.4
AL831833-1|CAD38544.1| 796|Homo sapiens hypothetical protein pr... 31 8.4
AL445232-2|CAI16506.2| 1564|Homo sapiens zinc finger CCCH-type c... 31 8.4
AL445232-1|CAI16505.1| 1668|Homo sapiens zinc finger CCCH-type c... 31 8.4
AL157758-3|CAM13064.1| 1564|Homo sapiens zinc finger CCCH-type c... 31 8.4
AL157758-2|CAI10903.1| 1668|Homo sapiens zinc finger CCCH-type c... 31 8.4
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 31 8.4
>BC107864-1|AAI07865.1| 385|Homo sapiens ZC3H13 protein protein.
Length = 385
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 68 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 108
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.1 bits (67), Expect = 8.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 684 EKGGQVSGKRQGRNRRAHEGAXRGKRXVSL*SCRVSPPLT*AS 556
EKG +VSGKR+GRN A + + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.1 bits (67), Expect = 8.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 684 EKGGQVSGKRQGRNRRAHEGAXRGKRXVSL*SCRVSPPLT*AS 556
EKG +VSGKR+GRN A + + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC032425-1|AAH32425.1| 469|Homo sapiens ZC3H13 protein protein.
Length = 469
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 98 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 138
>AY283618-1|AAP37483.1| 1564|Homo sapiens hypothetical protein
protein.
Length = 1564
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 351 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 391
>AL831833-1|CAD38544.1| 796|Homo sapiens hypothetical protein
protein.
Length = 796
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 176 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 216
>AL445232-2|CAI16506.2| 1564|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1564
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 351 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 391
>AL445232-1|CAI16505.1| 1668|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1668
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 351 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 391
>AL157758-3|CAM13064.1| 1564|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1564
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 351 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 391
>AL157758-2|CAI10903.1| 1668|Homo sapiens zinc finger CCCH-type
containing 13 protein.
Length = 1668
Score = 31.1 bits (67), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 737 RCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSPTRXDTTYRH 859
R R+ +PS+ PP +A+PYP + SP R + RH
Sbjct: 351 RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRH 391
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.1 bits (67), Expect = 8.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 684 EKGGQVSGKRQGRNRRAHEGAXRGKRXVSL*SCRVSPPLT*AS 556
EKG +VSGKR+GRN A + + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,588,345
Number of Sequences: 237096
Number of extensions: 2471862
Number of successful extensions: 6810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6806
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17174423760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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