Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L23
         (1222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   126   6e-30
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    35   0.026
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    30   0.75 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    30   0.75 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    30   0.75 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    30   0.75 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   7.0  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  126 bits (304), Expect = 6e-30
 Identities = 60/110 (54%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
 Frame = +1

Query: 178 SIQXLNTFDPFADAIKSSEDDVQX-GLVHVRIQQRNGRKXLTTVQGLSSEYDLKKIVRAC 354
           +IQ  NT DPFAD   + +DD Q    +H+RIQQRNGRK LTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 355 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 504
           KK+FACNGT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 256 VHVRIQQRNGRKXLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 432
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QGD 
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 433 RENICQWLTKSGLVKPE 483
             +I  ++ +     PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 737 QSNEIVNIPNSLFLFLYDIVFLNCCN 814
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 737 QSNEIVNIPNSLFLFLYDIVFLNCCN 814
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 737 QSNEIVNIPNSLFLFLYDIVFLNCCN 814
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 737 QSNEIVNIPNSLFLFLYDIVFLNCCN 814
           Q  E +++PN+LFL  Y + F +C N
Sbjct: 75  QKEEFIDVPNTLFLGCYTMGFQSCIN 100


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 761 PNSLFLFLYDIVFLNCCNNSINK*HVFV 844
           PN+L LF    + L  CN+SI    +FV
Sbjct: 182 PNALLLFFPSYLILRKCNSSIKFRQIFV 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,368
Number of Sequences: 5004
Number of extensions: 59362
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)