Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L23
(1222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 130 2e-30
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 124 2e-28
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 113 3e-25
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 110 2e-24
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 36 0.085
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 29 9.8
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 29 9.8
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 130 bits (315), Expect = 2e-30
Identities = 62/113 (54%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
Frame = +1
Query: 175 MSIQXLNTFDPFADAIKSSEDDVQXG---LVHVRIQQRNGRKXLTTVQGLSSEYDLKKIV 345
+ IQ FDPFA+A + + G VHVRIQQRNGRK LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 346 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 504
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 788 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 124 bits (298), Expect = 2e-28
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Frame = +1
Query: 202 DPFADAIKSSEDDVQXGL---VHVRIQQRNGRKXLTTVQGLSSEYDLKKIVRACKKEFAC 372
DPFA+A + + G VHVRIQQRNGRK LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Query: 373 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 504
NGTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 62 NGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 113 bits (272), Expect = 3e-25
Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Frame = +1
Query: 175 MSIQXLNTFDPFADAIKSSEDDVQXG---LVHVRIQQRNGRKXLTTVQGLSSEYDLKKIV 345
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 346 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 474
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 63 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 110 bits (264), Expect = 2e-24
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +1
Query: 256 VHVRIQQRNGRKXLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 435
VHVR+QQRNGRK LTTVQG+ EY+ K++R K+E CNG VVE E G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 436 ENICQWLTKSGLVKPEQLKVHGF 504
++ +L K+G+V+ + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 35.5 bits (78), Expect = 0.085
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 277 RNGRKXLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 453
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 454 LTKSGLVKPE 483
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 221 IASANGSNVLRXWMDIRLNVGXL 153
IA++N VLR WMD++ NV L
Sbjct: 440 IAASNHMEVLRRWMDLQRNVNVL 462
>03_05_0834 - 28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 28.7 bits (61), Expect = 9.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 232 EDDVQXGLVHVRIQQRNGRKXLTTVQGLSSEYDLKKIVRACKKEFAC-NGTVVEHPEYGE 408
EDDV L HV+ QR G+ + LSS YD +++ + C + + P E
Sbjct: 1078 EDDVLL-LDHVKKLQREGQLGAIVDRNLSSNYDGQEVEMMIQIALLCTQASPEDRPSMSE 1136
Query: 409 VLQ-LQGD 429
V++ L+G+
Sbjct: 1137 VVRMLEGE 1144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,083,172
Number of Sequences: 37544
Number of extensions: 402183
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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