Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L23
         (1222 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   128   8e-30
AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    29   6.7  
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   8.8  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   8.8  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  128 bits (309), Expect = 8e-30
 Identities = 63/112 (56%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
 Frame = +1

Query: 175 MSIQXLNTFDPFADAIKS--SEDDVQXGLVHVRIQQRNGRKXLTTVQGLSSEYDLKKIVR 348
           MSI  LN   P ADA +   +ED V+ G+ H+RIQQR GRK +TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 349 ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 504
             KK+ +CNGT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 268 IQQRNGRKXLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 447
           ++Q+ G K L  V G+     L  ++     +  CN     +P Y  +  ++   +E+  
Sbjct: 31  VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89

Query: 448 QWLT 459
           QWLT
Sbjct: 90  QWLT 93


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 731 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 826
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 731 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 826
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,275,984
Number of Sequences: 27780
Number of extensions: 350538
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)