Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L22
         (1471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.70 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.70 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.5  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
 Frame = +2

Query: 1211 PRPXXAXXPXXXTPPCXAXXPPXLXTXRPXXXRPXXHGXGRPPPAPXKXXXPLRXP--KX 1384
            P P     P    PP  +  PP   +  P   +        PPPA  +   P++ P    
Sbjct: 131  PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPA--QPAAPVKSPPSAP 188

Query: 1385 XXPXXRPPXPXPXPP 1429
              P   PP P   PP
Sbjct: 189  SLPSAVPPMPPKVPP 203



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/65 (27%), Positives = 20/65 (30%)
 Frame = +2

Query: 1250 PPCXAXXPPXLXTXRPXXXRPXXHGXGRPPPAPXKXXXPLRXPKXXXPXXRPPXPXPXPP 1429
            PP     P      RP    P       PPP+P     P+       P   PP   P  P
Sbjct: 124  PPSAPAPPTPQSELRPPTSAPPRPSI--PPPSPASAP-PIPSKAPPIPSSLPPPAQPAAP 180

Query: 1430 HTXPP 1444
               PP
Sbjct: 181  VKSPP 185


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
 Frame = +2

Query: 1211 PRPXXAXXPXXXTPPCXAXXPPXLXTXRPXXXRPXXHGXGRPP-PAPXKXXXPLRXPKXX 1387
            P+P  A  P     P  A   P      P    P     G PP P P     P+  P   
Sbjct: 1143 PKPSVAAPPVPA--PSGAPPVPKPSVAAPPVPAP---SSGIPPVPKPAAGVPPVPPPSEA 1197

Query: 1388 XPXXRPPXPXPX--PPHTXPPXTT 1453
             P  +P    P   PP T PP  T
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPT 1221



 Score = 30.3 bits (65), Expect = 0.70
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
 Frame = +2

Query: 1211 PRPXXAXXPXXXTPPCXAXXPPXLXTXRPXXXRPXXHGXGRPPPAPXKXXXPLRXPKXXX 1390
            P P  +  P    P   A   P   +  P   +P     G PP  P     P+  P    
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP---AAGVPPVPPPSEAPPVPKPSVGV 1207

Query: 1391 PXXRPP---XPXPXPPHTXPP 1444
            P   PP    P P P    PP
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPP 1228


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 1334 PPPAPXKXXXPLRXPKXXXPXXRPPXPXPXPP 1429
            PPPAP     P   P        PP P P PP
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 1248 PPPAXPXXRXXXKXPGPTPHXPXXTGXGAXPPPXQXXXXPSXXXXXPXP 1394
            PPP  P        P P P  P     G  PPP             P P
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 20/73 (27%), Positives = 24/73 (32%)
 Frame = +2

Query: 1235 PXXXTPPCXAXXPPXLXTXRPXXXRPXXHGXGRPPPAPXKXXXPLRXPKXXXPXXRPPXP 1414
            P    PP     PP +         P  +       +P     P   PK   P   PP P
Sbjct: 184  PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPE--IPPTYTPKQADPLPAPPPP 241

Query: 1415 XPXPPHTXPPXTT 1453
               PP T PP +T
Sbjct: 242  ---PPPTLPPQST 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
 Frame = +2

Query: 1235 PXXXTPPCXAXXPPXLXTXR----PXXXRPXXHGXGRPPPAPXKXXXPLRXPKXXXPXXR 1402
            P   + P     PP L + R    P    P   G   P   P         P    P   
Sbjct: 364  PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423

Query: 1403 PPXPXPXPPHTXPP 1444
            PP   P  P + PP
Sbjct: 424  PPSAPPSLPPSAPP 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,408
Number of Sequences: 5004
Number of extensions: 18681
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 818637862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)