Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L19
         (1266 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      29   0.11 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          28   0.20 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   2.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   7.5  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 813 YEDALEYFLRAETIQPRFYSVNLLRXGICYHKLGKEDQAKYYLK 944
           Y++ L YFLR + +QP++    L   G+ +  +  +    Y+ K
Sbjct: 424 YQNILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYFDK 467


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 813 YEDALEYFLRAETIQPRFYSVNLLRXGICYHKLGKEDQAKYYLK 944
           Y+  L YFLR + +QP++    L   G+ +  +  +    Y+ K
Sbjct: 424 YQKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKLYTYFDK 467


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 573 FAVHKWYALILDAKSHHNGIKERI 644
           F   K+Y  I+DA  H + IK  I
Sbjct: 7   FETSKYYVTIIDAPGHRDFIKNMI 30


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 573 FAVHKWYALILDAKSHHNGIKERI 644
           F   K+Y  I+DA  H + IK  I
Sbjct: 23  FETSKYYVTIIDAPGHRDFIKNMI 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 573 FAVHKWYALILDAKSHHNGIKERI 644
           F   K+Y  I+DA  H + IK  I
Sbjct: 80  FETSKYYVTIIDAPGHRDFIKNMI 103


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 573 FAVHKWYALILDAKSHHNGIKERI 644
           F   K+Y  I+DA  H + IK  I
Sbjct: 80  FETAKYYVTIIDAPGHRDFIKNMI 103


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +3

Query: 681  AVTLNPNDATTLHMLGEWCYQITEMP-WHQRKIAEVLFASPPHSTYEDALEYFLRAETIQ 857
            ++  NP +   L++L        +   W    + EVL   P    +   L   L    +Q
Sbjct: 838  SIATNPKEQAQLNLLASDPAVYEDWRHWKFPNLVEVLDEFPSVRPFAPLL--LLHLTPLQ 895

Query: 858  PRFYSVN 878
            PRFYS++
Sbjct: 896  PRFYSIS 902


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 550 CLEIISYASNMKSFFCALLYLDXF 479
           CL   +Y SNM S F  LL  + F
Sbjct: 12  CLRWNNYQSNMTSVFHQLLQTEAF 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,892
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43342743
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)