Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L18
(1406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.041
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.042
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 2.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 6.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 8.2
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.041
Identities = 26/84 (30%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Frame = +2
Query: 860 GXXWGGXGGXPPXP-GXGGXGGXPGXXXXXGVXXXXXKXXFXXPXXXXXGXXXXXXXXGG 1036
G GG GG PP P G GG GG G G P G GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG----GGPGGFEGGPGGFGGGPGG 246
Query: 1037 XXXGFXXXXGXGGGXXXGXXXXGG 1108
G G GG G GG
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGG 270
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect(2) = 0.042
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 927 GXPPXPPXPGXGGXPPXPPXXXP 859
G PP PP PG G P PP P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 930 PGXPPXPPXPGXGGXPPXPP 871
P PP PP G PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -3
Query: 921 PPXPPXPGXGGXPPXPPXXXPXXXXXXKXPP 829
P PP P GG PP PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Frame = -1
Query: 962 PXXXPXXXXXXXGXPPXPPXP-XGGXXPXXPPXXXP 858
P P G PP PP P G P PP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 20.6 bits (41), Expect(2) = 0.042
Identities = 9/29 (31%), Positives = 9/29 (31%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPP 1030
P PP P P P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP 761
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.5
Identities = 29/124 (23%), Positives = 29/124 (23%)
Frame = -3
Query: 1164 PPXPXKXXXFFXXXKXPXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXG 985
PP P K P P P PP P P P P G
Sbjct: 1102 PPVP-KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP---SVAAPPVPAPSG 1157
Query: 984 XXKXXFXXXXXTPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKX 805
P G PP P P G P PP P P
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 804 PPXP 793
PP P
Sbjct: 1217 PPVP 1220
Score = 27.9 bits (59), Expect = 3.6
Identities = 29/125 (23%), Positives = 29/125 (23%), Gaps = 1/125 (0%)
Frame = -3
Query: 1164 PPXPXKXXXFFXXXKXPXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXG 985
PP P K P P P PP P P PP P
Sbjct: 1121 PPVP-KPSVAAPPVPVPSGAPPVPKPSVAAPPVPA----PSGAPPVPKPSVAAPPVPAPS 1175
Query: 984 XXKXXFXXXXXTPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKX-PPXXXXXXK 808
P P P P G P PP P PP K
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235
Query: 807 XPPXP 793
PP P
Sbjct: 1236 APPVP 1240
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 926 GXPPXPPXPXGGXXPXXPPXXXP 858
G PP PP P G P PP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 930 PGXPPXPPXPGXGGXPPXPPXXXP 859
PG PP PP P P PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 6.2
Identities = 22/87 (25%), Positives = 22/87 (25%), Gaps = 1/87 (1%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP PP P P PP P G P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA--PPSLPMGAPAAP-PLPPSAPIAP 457
Query: 936 XXP-GXPPXPPXPGXGGXPPXPPXXXP 859
P G P PP P PP P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 930 PGXPPXPPXPGXGGXPPXPP 871
P PP PP P P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,181
Number of Sequences: 5004
Number of extensions: 25027
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 780960954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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