Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L18
         (1406 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.56 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.99 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -3

Query: 921 PPXPPXPGXGGXPPXPPXXXPXXXXXXKXPP 829
           PP PP P   G PP P    P        PP
Sbjct: 582 PPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 591 PKKLXXPFPPXSPXXXXPPPSPHXGG 514
           P     P PP  P    PPPSP  GG
Sbjct: 577 PNAQPPPAPPPPPPMG-PPPSPLAGG 601


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 921 PPXPPXPGXGGXPPXPP 871
           PP PP P  GG P  PP
Sbjct: 297 PPRPPMPMQGGAPGGPP 313



 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 920 PPXPPXPXGGXXPXXPP 870
           PP PP P  G  P  PP
Sbjct: 297 PPRPPMPMQGGAPGGPP 313


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,833
Number of Sequences: 2352
Number of extensions: 9104
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 162964395
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)