Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L18
(1406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 36 0.052
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.069
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.069
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.091
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.091
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.091
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 34 0.21
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 1.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 32 1.1
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 1.1
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 32 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 1.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 1.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 1.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 2.0
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 31 2.0
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 31 2.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 2.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 2.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 2.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 2.6
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 31 2.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 2.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 2.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 2.6
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 2.6
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 2.6
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 2.6
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 30 3.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 3.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 3.4
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 3.4
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 3.4
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 30 4.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 30 4.5
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 4.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 4.5
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 6.0
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 7.9
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 36.3 bits (80), Expect = 0.052
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPP 829
P PG PP PP PG G PP P P K PP
Sbjct: 707 PPPPGIPGYPPAPPPPGVG--PPPPQGIPPMGFDPNKPPP 744
Score = 33.5 bits (73), Expect = 0.37
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Frame = -3
Query: 930 PGXPPX-----PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPP 799
PG PP PP PG G PP PP PP K PP
Sbjct: 696 PGVPPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPP 744
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.069
Identities = 27/98 (27%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXP--PPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPX 943
P PP P P PP P P PP + P G P
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP--GMPPPPPPSRFGPPG 329
Query: 942 XXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPP 829
P PP P GG PP PP P PP
Sbjct: 330 MGGMP-PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
Score = 33.5 bits (73), Expect = 0.37
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 5/127 (3%)
Frame = -1
Query: 920 PPXPPXPXGGXXPXXPPXXXPXXXXXXXXPPXXXXXKNXPXFPXXXKTXXXXGXXXGXXG 741
PP PP P P PP PP P P +T G G
Sbjct: 261 PPVPPPPPS-VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPP 318
Query: 740 XNPXXXFX--GGGPXAPXKXPXXFFP---PLTXGGGXXXXNPGGXPLLXXSAXXAPKSXX 576
P F G G P P +P P PG P S AP S
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH 378
Query: 575 GLFPPXP 555
G+ PP P
Sbjct: 379 GMIPPPP 385
Score = 33.5 bits (73), Expect = 0.37
Identities = 30/112 (26%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP PPP P P PP P G P
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPG--PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 936 XXPGXPPXPPX----PGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP G G PP PP P PP PP P
Sbjct: 343 YPGGMPPPPPPRYPSAGPGMYPPPPPSRPP-------APPSGHGMIPPPPPP 387
Score = 32.7 bits (71), Expect = 0.64
Identities = 38/145 (26%), Positives = 41/145 (28%), Gaps = 9/145 (6%)
Frame = -3
Query: 930 PGXPPXPPXPGX------GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
PG P PP G G PP PP PP + PP P
Sbjct: 241 PGYQP-PPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP 299
Query: 768 XGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXP 589
G G P G P P S F GG PG P P
Sbjct: 300 PPPPPGRTPGPPGMP----GMPPPPPPSR--FGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
Query: 588 K-KLXXP--FPPXSPXXXXPPPSPH 523
+ P +PP P PPS H
Sbjct: 354 RYPSAGPGMYPPPPPSRPPAPPSGH 378
Score = 31.1 bits (67), Expect = 2.0
Identities = 24/88 (27%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPP----XXXPXXXXXXKXPPXXXXXXKXPPXPXXXX 781
P P PP PP PG PP PP P + P PP P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 780 NGXXXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P GG P P
Sbjct: 326 GPPGMG---GMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.069
Identities = 27/98 (27%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXP--PPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPX 943
P PP P P PP P P PP + P G P
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP--GMPPPPPPSRFGPPG 339
Query: 942 XXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPP 829
P PP P GG PP PP P PP
Sbjct: 340 MGGMP-PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
Score = 33.5 bits (73), Expect = 0.37
Identities = 34/127 (26%), Positives = 37/127 (29%), Gaps = 5/127 (3%)
Frame = -1
Query: 920 PPXPPXPXGGXXPXXPPXXXPXXXXXXXXPPXXXXXKNXPXFPXXXKTXXXXGXXXGXXG 741
PP PP P P PP PP P P +T G G
Sbjct: 271 PPVPPPPPS-VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP-GMPP 328
Query: 740 XNPXXXFX--GGGPXAPXKXPXXFFP---PLTXGGGXXXXNPGGXPLLXXSAXXAPKSXX 576
P F G G P P +P P PG P S AP S
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGH 388
Query: 575 GLFPPXP 555
G+ PP P
Sbjct: 389 GMIPPPP 395
Score = 33.5 bits (73), Expect = 0.37
Identities = 30/112 (26%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP PPP P P PP P G P
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPG--PPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 936 XXPGXPPXPPX----PGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP G G PP PP P PP PP P
Sbjct: 353 YPGGMPPPPPPRYPSAGPGMYPPPPPSRPP-------APPSGHGMIPPPPPP 397
Score = 32.7 bits (71), Expect = 0.64
Identities = 38/145 (26%), Positives = 41/145 (28%), Gaps = 9/145 (6%)
Frame = -3
Query: 930 PGXPPXPPXPGX------GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
PG P PP G G PP PP PP + PP P
Sbjct: 251 PGYQP-PPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP 309
Query: 768 XGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXP 589
G G P G P P S F GG PG P P
Sbjct: 310 PPPPPGRTPGPPGMP----GMPPPPPPSR--FGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
Query: 588 K-KLXXP--FPPXSPXXXXPPPSPH 523
+ P +PP P PPS H
Sbjct: 364 RYPSAGPGMYPPPPPSRPPAPPSGH 388
Score = 31.1 bits (67), Expect = 2.0
Identities = 24/88 (27%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPP----XXXPXXXXXXKXPPXXXXXXKXPPXPXXXX 781
P P PP PP PG PP PP P + P PP P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 780 NGXXXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P GG P P
Sbjct: 336 GPPGMG---GMPPPPPPGMRYPGGMPPP 360
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXX 784
P G PP PP PG GG PP PP PP PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 783 XNGXXXG 763
G G
Sbjct: 777 PGGFKGG 783
Score = 34.3 bits (75), Expect = 0.21
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Frame = -3
Query: 927 GXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP PG GG PP PP PP PP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 32.7 bits (71), Expect = 0.64
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 962 PXXXPXXXXXXXGXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPP 828
P P G PP PP P GG P PP PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/82 (28%), Positives = 23/82 (28%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP P PPP P PP P P
Sbjct: 717 PGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGG-------PPPPPPPPGG 767
Query: 936 XXPGXPPXPPXPGXGGXPPXPP 871
P PP PP GG PP PP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -1
Query: 743 GXNPXXXFXGGGPXAPXKXPXXFFPPLTXGGGXXXXNPGGXPLLXXSAXXAPKSXXGLFP 564
G + GG P P P PP G GG P P S P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 563 PXPXXXXXPPHPP 525
P P PP PP
Sbjct: 762 PPPPGGCPPPPPP 774
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 926 GXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPPXXXXXKNXPXFP 792
G PP PP P G P PP PP P P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXX 784
P G PP PP PG GG PP PP PP PP P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 783 XNGXXXG 763
G G
Sbjct: 777 PGGFKGG 783
Score = 34.3 bits (75), Expect = 0.21
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Frame = -3
Query: 927 GXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP PG GG PP PP PP PP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 32.7 bits (71), Expect = 0.64
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 962 PXXXPXXXXXXXGXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPP 828
P P G PP PP P GG P PP PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/82 (28%), Positives = 23/82 (28%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP P PPP P PP P P
Sbjct: 717 PGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGG-------PPPPPPPPGG 767
Query: 936 XXPGXPPXPPXPGXGGXPPXPP 871
P PP PP GG PP PP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -1
Query: 743 GXNPXXXFXGGGPXAPXKXPXXFFPPLTXGGGXXXXNPGGXPLLXXSAXXAPKSXXGLFP 564
G + GG P P P PP G GG P P S P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 563 PXPXXXXXPPHPP 525
P P PP PP
Sbjct: 762 PPPPGGCPPPPPP 774
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 926 GXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPPXXXXXKNXPXFP 792
G PP PP P G P PP PP P P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.5 bits (78), Expect = 0.091
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXX 784
P G PP PP PG GG PP PP PP PP P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 783 XNGXXXG 763
G G
Sbjct: 360 PGGFKGG 366
Score = 34.3 bits (75), Expect = 0.21
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Frame = -3
Query: 927 GXPPXPPXPGX-----GGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP PG GG PP PP PP PP P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 32.7 bits (71), Expect = 0.64
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 962 PXXXPXXXXXXXGXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPP 828
P P G PP PP P GG P PP PP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/82 (28%), Positives = 23/82 (28%)
Frame = -3
Query: 1116 PXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXGXXKXXFXXXXXTPXXX 937
P PP P PPP P PP P P
Sbjct: 300 PGLPPITGGPP--PPPPPGGLPPITGGPPPPPPPGGLPPISGG-------PPPPPPPPGG 350
Query: 936 XXPGXPPXPPXPGXGGXPPXPP 871
P PP PP GG PP PP
Sbjct: 351 CPPPPPPPPPGGFKGGPPPPPP 372
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -1
Query: 743 GXNPXXXFXGGGPXAPXKXPXXFFPPLTXGGGXXXXNPGGXPLLXXSAXXAPKSXXGLFP 564
G + GG P P P PP G GG P P S P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 563 PXPXXXXXPPHPP 525
P P PP PP
Sbjct: 345 PPPPGGCPPPPPP 357
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -1
Query: 926 GXPPXPPXPXGGXXPXXPPXXXPXXXXXXXXPPXXXXXKNXPXFP 792
G PP PP P G P PP PP P P
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 384
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 34.3 bits (75), Expect = 0.21
Identities = 28/104 (26%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Frame = +2
Query: 860 GXXWGGXGGXPPXPGXGGXGGXPGXXXXXGVXXXXXKXXFXXPXXXXXGXXXXXXXXG-- 1033
G +GG GG P G GG GG G G G G
Sbjct: 134 GGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGM 193
Query: 1034 GXXXGFXXXXGXGGGXXXGXXXXGGXXGXFXXXKXXXXFXGXGG 1165
G G G GGG G GG G + G GG
Sbjct: 194 GGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGG 237
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = -1
Query: 698 PXKXPXXFFPPLTXGGGXXXXNPGGXPLLXXSAXXAPKSXXGLFPPXPXXXXXPPHPP 525
P P F PP GG P P+ P G+ PP P PP PP
Sbjct: 66 PPPVPNGFIPPPPGPGGI----PPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = -3
Query: 912 PPXPGXGGXPPXPP----XXXPXXXXXXKXPPXXXXXXKXPPXP 793
PP PG GG PP PP P PP PP P
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
TP PG P P PG G PP P P K P PP P
Sbjct: 110 TPGKPGRPGKPGAPGLPGNPGRPPQQP-CEPITPPPCKPCPQGPPGPPGPPGP 161
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
TP PG P P PG G PP P P K P PP P
Sbjct: 110 TPGKPGRPGKPGAPGLPGNPGRPPQQP-CEPITPPPWKPCPQGPPGPPGPPGP 161
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
TP PG P P PG G PP P P K P PP P
Sbjct: 110 TPGKPGRPGKPGAPGLPGNPGRPPQQP-CEPITPPPCKPCPQGPPGPPGPPGP 161
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 1.1
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = -3
Query: 1164 PPXPXKXXXFFXXXKXPXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXG 985
PP P K P PP P PPP P P P G
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 984 XXKXXFXXXXXTPXXXXXPGXPPXPPXPGXGGXPPXPP 871
P P P P G PP PP
Sbjct: 296 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Frame = -3
Query: 930 PGXPPX---PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
P PP PP P G PP P P PP PP P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -3
Query: 948 PXXXXXPGXPPX--PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPP 799
P P PP PP G G PP P P PP PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 1.1
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = -3
Query: 1164 PPXPXKXXXFFXXXKXPXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXG 985
PP P K P PP P PPP P P P G
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 984 XXKXXFXXXXXTPXXXXXPGXPPXPPXPGXGGXPPXPP 871
P P P P G PP PP
Sbjct: 317 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Frame = -3
Query: 930 PGXPPX---PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
P PP PP P G PP P P PP PP P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -3
Query: 948 PXXXXXPGXPPX--PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPP 799
P P PP PP G G PP P P PP PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 1.1
Identities = 24/98 (24%), Positives = 24/98 (24%)
Frame = -3
Query: 1164 PPXPXKXXXFFXXXKXPXXPPFXXXPXXXPPPXPXXXXXPXXXPPXXXKXXXXPXXXXXG 985
PP P K P PP P PPP P P P G
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSP---PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 984 XXKXXFXXXXXTPXXXXXPGXPPXPPXPGXGGXPPXPP 871
P P P P G PP PP
Sbjct: 302 SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Frame = -3
Query: 930 PGXPPX---PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
P PP PP P G PP P P PP PP P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = -3
Query: 948 PXXXXXPGXPPX--PPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPP 799
P P PP PP G G PP P P PP PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 2.0
Identities = 33/143 (23%), Positives = 35/143 (24%), Gaps = 2/143 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
P PG P P PG G P P P PP + PP P G
Sbjct: 107 PGPAGAPGKPGKPGRPGAPG-TPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP-GAP 164
Query: 768 XGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXP 589
G+P G P P G P P P
Sbjct: 165 GDPGEAGTPGRPGTDAAPGS-PGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 223
Query: 588 KKLXXPFPPXSP--XXXXPPPSP 526
P PP P PP P
Sbjct: 224 GDSGPPGPPGPPGAPGNDGPPGP 246
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 31.1 bits (67), Expect = 2.0
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNG 775
TP PG P P PG G PP P P + P PP P G
Sbjct: 77 TPGKPGRPGKPGAPGLPGNPGHPPQQP-CDPITPPPCQPCPQGPPGPPGPPGPSGDAGG 134
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 31.1 bits (67), Expect = 2.0
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNG 775
TP PG P P PG G PP P P + P PP P G
Sbjct: 110 TPGKPGRPGKPGAPGLPGNPGRPPQQP-CDPITPPPCQPCPQGPPGPPGPPGPSGDAGG 167
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 31.1 bits (67), Expect = 2.0
Identities = 33/143 (23%), Positives = 35/143 (24%), Gaps = 2/143 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
P PG P P PG G P P P PP + PP P G
Sbjct: 102 PGPAGAPGKPGKPGRPGAPG-TPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP-GAP 159
Query: 768 XGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXP 589
G+P G P P G P P P
Sbjct: 160 GDPGEAGTPGRPGTDAAPGS-PGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 218
Query: 588 KKLXXPFPPXSP--XXXXPPPSP 526
P PP P PP P
Sbjct: 219 GDSGPPGPPGPPGAPGNDGPPGP 241
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 31.1 bits (67), Expect = 2.0
Identities = 33/143 (23%), Positives = 35/143 (24%), Gaps = 2/143 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
P PG P P PG G P P P PP + PP P G
Sbjct: 102 PGPAGAPGKPGKPGRPGAPG-TPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPP-GAP 159
Query: 768 XGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXP 589
G+P G P P G P P P
Sbjct: 160 GDPGEAGTPGRPGTDAAPGS-PGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEP 218
Query: 588 KKLXXPFPPXSP--XXXXPPPSP 526
P PP P PP P
Sbjct: 219 GDSGPPGPPGPPGAPGNDGPPGP 241
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.1 bits (67), Expect = 2.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 921 PPXPPXPGXGGXPPXPP 871
PP PP P GG PP PP
Sbjct: 578 PPPPPPPMLGGPPPPPP 594
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Frame = -3
Query: 921 PPXPPXP-GXGGXPPXPPXXXPXXXXXXKXPP 829
PP PP P G PP PP P PP
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXN-GX 772
P PG P P PG G P P P PP P P N G
Sbjct: 116 PGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGS 175
Query: 771 XXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P G P
Sbjct: 176 PAGPSGPGPAGPPGPAGPAGNDGAP 200
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 872 GGXGGXPPXPGXGGXGGXPGXXXXXG 949
GG GG P G GG GG PG G
Sbjct: 74 GGFGGGPSYGGRGGFGGGPGFGGRGG 99
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 872 GGXGGXPPXPGXGGXGGXPGXXXXXG 949
GG GG P G GG GG PG G
Sbjct: 35 GGFGGGPGQFGRGGFGGGPGSNYGPG 60
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXN-GX 772
P PG P P PG G P P P PP P P N G
Sbjct: 116 PGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGS 175
Query: 771 XXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P G P
Sbjct: 176 PAGPSGPGPAGPPGPAGPAGNDGAP 200
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXN-GX 772
P PG P P PG G P P P PP P P N G
Sbjct: 116 PGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGS 175
Query: 771 XXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P G P
Sbjct: 176 PAGPSGPGPAGPPGPAGPAGNDGAP 200
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXN-GX 772
P PG P P PG G P P P PP P P N G
Sbjct: 116 PGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGS 175
Query: 771 XXGXXXGXXXGKPXXXLXRGGXPCP 697
G G P G P
Sbjct: 176 PAGPSGPGPAGPPGPAGPAGNDGAP 200
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -3
Query: 927 GXPPXPPXPGXG-GXPPXPPXXXP 859
G PP PP P G G PP PP P
Sbjct: 232 GAPPPPPLPPVGAGAPPPPPPPPP 255
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -3
Query: 927 GXPPXPPXPGXG-GXPPXPPXXXP 859
G PP PP P G G PP PP P
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPPP 241
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = -3
Query: 927 GXPPXPPXPGXG-GXPPXPPXXXP 859
G PP PP P G G PP PP P
Sbjct: 218 GAPPPPPLPPVGAGAPPPPPPPPP 241
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
TP PG P P PG G PP P P + P PP P
Sbjct: 110 TPGKPGRPGKPGAPGLPGNPGRPPQQP-CDPITPPPCQPCPQGPPGPPGPPGP 161
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 3.4
Identities = 42/170 (24%), Positives = 42/170 (24%), Gaps = 4/170 (2%)
Frame = -1
Query: 1115 PXXPXFXXXXGXPPPXSXXFXXXPXXXPPXXXXXXXXPXXPXXGXXXXXFXPXXXPXXXX 936
P P G PP P PP P G F P P
Sbjct: 319 PFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS---GGPPGPFDPSGAPPS-- 373
Query: 935 XXXGXPPXPPXPXGGXXPXXPP-XXXPXXXXXXXXPPXXXXXKNXPXF--PXXXKTXXXX 765
G PP P P G PP P PP P P
Sbjct: 374 ---GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 430
Query: 764 GXXXGXXG-XNPXXXFXGGGPXAPXKXPXXFFPPLTXGGGXXXXNPGGXP 618
G G NP GGP P PP GG NP G P
Sbjct: 431 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGA--PP--SGGPPGPFNPSGAP 476
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 927 GXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
G PP PP P PP P P PP PP P
Sbjct: 26 GPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 872 GGXGGXPPXPGXGGXGGXPG 931
GG GG P PG GG GG G
Sbjct: 622 GGGGGPPRGPGGGGGGGPTG 641
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 872 GGXGGXPPXPGXGGXGGXPG 931
GG GG P PG GG GG G
Sbjct: 622 GGGGGPPRGPGGGGGGGPTG 641
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +2
Query: 860 GXXWGGXGGXPPXPGXGGXGGXPG 931
G GG GG P PG GG GG PG
Sbjct: 180 GYTSGGSGG-PGGPGSGGGGGGPG 202
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.9 bits (64), Expect = 4.5
Identities = 35/146 (23%), Positives = 37/146 (25%), Gaps = 1/146 (0%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPP-XPXXXXNGX 772
P PG P P PG G PP P P K P PP P
Sbjct: 116 PGNPGRPGKPGAPGLPGNPGKPPVQP-CEPITPPPCKPCPDGPAGPPGPPGAPGDAGTNG 174
Query: 771 XXGXXXGXXXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXX 592
G G P G P P G +PG P E
Sbjct: 175 APGAPGG---DAPPGEAGPKGPPGP---------PGSPGAPGEPGRPGDDAPSEPLIPGE 222
Query: 591 PKKLXXPFPPXSPXXXXPPPSPHXGG 514
P P PP P +P G
Sbjct: 223 PGPQGPPGPPGQAGPDGQPGAPGGPG 248
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 4.5
Identities = 36/152 (23%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
P PG P P PG G P P P PP + PP P G
Sbjct: 109 PGPAGVPGKPGKPGRPGAPG-QPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP-GAP 166
Query: 768 XGXXXGXXXGKPXXXLXRG-----GXPCPXXXSXXVFSTXDXG--GRXXXXKPGGXXPXE 610
G+P G G P P + D G + PG
Sbjct: 167 GDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
Query: 609 XXXXXXPKKLXXPFPPXSPXXXXPPPSPHXGG 514
P P PP +P PP P G
Sbjct: 227 DAGPAGP-----PGPPGAPGNDGPPGPPGPKG 253
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 4.5
Identities = 36/152 (23%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Frame = -3
Query: 948 PXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXX 769
P PG P P PG G P P P PP + PP P G
Sbjct: 109 PGPAGVPGKPGKPGRPGAPG-QPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP-GAP 166
Query: 768 XGXXXGXXXGKPXXXLXRG-----GXPCPXXXSXXVFSTXDXG--GRXXXXKPGGXXPXE 610
G+P G G P P + D G + PG
Sbjct: 167 GDPGEAGTPGRPGTDATPGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
Query: 609 XXXXXXPKKLXXPFPPXSPXXXXPPPSPHXGG 514
P P PP +P PP P G
Sbjct: 227 DAGPAGP-----PGPPGAPGNDGPPGPPGPKG 253
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 29.5 bits (63), Expect = 6.0
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -3
Query: 951 TPXXXXXPGXPPXPPXPGXGGXPPXPPXXXPXXXXXXKXPPXXXXXXKXPPXP 793
TP PG P PG G PP P P K P + PP P
Sbjct: 108 TPGKPGRPGKPGVAGLPGNPGRPPQAP-CDPITPPPCKPCPQGPPGVQGPPGP 159
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 7.9
Identities = 31/142 (21%), Positives = 33/142 (23%), Gaps = 8/142 (5%)
Frame = -3
Query: 918 PXPPXPGXGGXPPXP---PXXXPXXXXXXKXPPXXXXXXKXPPXPXXXXNGXXXGXXXGX 748
P PP G G PP P P + PP PP P
Sbjct: 33 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGNA 92
Query: 747 XXGKPXXXLXRGGXPCPXXXSXXVFSTXDXGGRXXXXKPGGXXPXEXXXXXXPKKLXXP- 571
P G P P S R P G P+ L
Sbjct: 93 SRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEG 152
Query: 570 ----FPPXSPXXXXPPPSPHXG 517
PP P PP P G
Sbjct: 153 NASRRPPPPPKGTGSPPPPPTG 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,841
Number of Sequences: 27780
Number of extensions: 332552
Number of successful extensions: 6438
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3996164352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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