Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L13
         (1328 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089614-1|AAL90352.1|  417|Drosophila melanogaster RE28792p pro...    31   2.7  
AY060989-1|AAL28537.1|  222|Drosophila melanogaster GM14833p pro...    31   2.7  
AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA...    31   2.7  
AE014296-852|AAF47904.2|  242|Drosophila melanogaster CG11345-PA...    31   3.5  

>AY089614-1|AAL90352.1|  417|Drosophila melanogaster RE28792p
           protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -3

Query: 642 FXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXPP 463
           + P   GT  PP     P         PPPP  E    P    L P + P    G + PP
Sbjct: 317 YVPAPPGTQAPPPMPP-PLMPWMSAPQPPPPATEPLNPPIPGTLPPLIPP--PPGTSAPP 373

Query: 462 LPP 454
           +PP
Sbjct: 374 MPP 376


>AY060989-1|AAL28537.1|  222|Drosophila melanogaster GM14833p
           protein.
          Length = 222

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -3

Query: 642 FXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXPP 463
           + P   GT  PP     P         PPPP  E    P    L P + P    G + PP
Sbjct: 122 YVPAPPGTQAPPPMPP-PLMPWMSAPQPPPPATEPLNPPIPGTLPPLIPP--PPGTSAPP 178

Query: 462 LPP 454
           +PP
Sbjct: 179 MPP 181


>AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA
           protein.
          Length = 787

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -3

Query: 642 FXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXPP 463
           + P   GT  PP     P         PPPP  E    P    L P + P    G + PP
Sbjct: 687 YVPAPPGTQAPPPMPP-PLMPWMSAPQPPPPATEPLNPPIPGTLPPLIPP--PPGTSAPP 743

Query: 462 LPP 454
           +PP
Sbjct: 744 MPP 746


>AE014296-852|AAF47904.2|  242|Drosophila melanogaster CG11345-PA
            protein.
          Length = 242

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = +2

Query: 824  PPRXXXKKNPPXXXXXGPPXPX*KXGXXXPKXHPPKXPPXGKXXXXKKXGXXXQTPPXKX 1003
            PP    K NPP      PP P  K     P   PP  PP  K    K        P  K 
Sbjct: 113  PPPPVVKVNPPKPAYLPPPPPVVKVNPPKPSYLPP-PPPVVKVNPPKPAYVPPPPPAVKV 171

Query: 1004 XP 1009
             P
Sbjct: 172  NP 173



 Score = 30.3 bits (65), Expect = 6.2
 Identities = 20/62 (32%), Positives = 20/62 (32%)
 Frame = +2

Query: 824  PPRXXXKKNPPXXXXXGPPXPX*KXGXXXPKXHPPKXPPXGKXXXXKKXGXXXQTPPXKX 1003
            PP    K NPP      PP P  K     P   PP  PP  K    K        P  K 
Sbjct: 96   PPPPVIKVNPPKPAYLPPPPPVVKVNPPKPAYLPP-PPPVVKVNPPKPSYLPPPPPVVKV 154

Query: 1004 XP 1009
             P
Sbjct: 155  NP 156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,129,301
Number of Sequences: 53049
Number of extensions: 559073
Number of successful extensions: 893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7232452275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)