Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_L13
(1328 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.064
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.064
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.064
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.79
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.79
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.79
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.79
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.79
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 32 1.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.9 bits (79), Expect = 0.064
Identities = 23/64 (35%), Positives = 23/64 (35%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G P P P F G P
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPP----GGCPPP---PPPPPPGGFKGGPPP 786
Query: 465 PLPP 454
P PP
Sbjct: 787 PPPP 790
Score = 31.9 bits (69), Expect = 1.0
Identities = 25/73 (34%), Positives = 25/73 (34%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G G P P P G P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGG--PPPPPPPG---GLPPISG-GPPPPPPPPGGCPPP 771
Query: 465 PLPPETXKFFXXP 427
P PP F P
Sbjct: 772 PPPPPPGGFKGGP 784
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.9 bits (79), Expect = 0.064
Identities = 23/64 (35%), Positives = 23/64 (35%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G P P P F G P
Sbjct: 734 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPP----GGCPPP---PPPPPPGGFKGGPPP 786
Query: 465 PLPP 454
P PP
Sbjct: 787 PPPP 790
Score = 31.9 bits (69), Expect = 1.0
Identities = 25/73 (34%), Positives = 25/73 (34%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G G P P P G P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGG--PPPPPPPG---GLPPISG-GPPPPPPPPGGCPPP 771
Query: 465 PLPPETXKFFXXP 427
P PP F P
Sbjct: 772 PPPPPPGGFKGGP 784
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.9 bits (79), Expect = 0.064
Identities = 23/64 (35%), Positives = 23/64 (35%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G P P P F G P
Sbjct: 317 GLPPITGGPPPPPPPGGLPPISGGPPPPPPPP----GGCPPP---PPPPPPGGFKGGPPP 369
Query: 465 PLPP 454
P PP
Sbjct: 370 PPPP 373
Score = 31.9 bits (69), Expect = 1.0
Identities = 25/73 (34%), Positives = 25/73 (34%)
Frame = -3
Query: 645 GFXPXLGGTXXPPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFSGKNXP 466
G P GG PP G P G PPPP G G P P P G P
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGG--PPPPPPPG---GLPPISG-GPPPPPPPPGGCPPP 354
Query: 465 PLPPETXKFFXXP 427
P PP F P
Sbjct: 355 PPPPPPGGFKGGP 367
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.79
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Frame = -3
Query: 612 PPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFS----GKNXPPLPP 454
PP G WP PPPP G G P + P P F G PP PP
Sbjct: 290 PPSSGMWPPP-------PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -3
Query: 612 PPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXP-FXFSGKNXPPLPP 454
PP G P G PPPP G P + P P + G PP PP
Sbjct: 301 PPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.79
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Frame = -3
Query: 612 PPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXPFXFS----GKNXPPLPP 454
PP G WP PPPP G G P + P P F G PP PP
Sbjct: 300 PPSSGMWPPP-------PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 29.9 bits (64), Expect = 4.2
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -3
Query: 612 PPXFGXWPXXXSGRXXXPPPPXGEXXGAPKXXXLXPXVXP-FXFSGKNXPPLPP 454
PP G P G PPPP G P + P P + G PP PP
Sbjct: 311 PPPPGRTPGPP-GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.79
Identities = 23/95 (24%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Frame = +2
Query: 824 PPRXXXKKNPPXXXXXGPPXPX*KXGXXXPKXHPPKXPPXGKXXXXKKXGXXXQ----TP 991
PP K +PP PP P P+ P PP G G +P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 992 PXKXXPFXXTXKXXFXXPPRGXXXXXXGGGXNXPP 1096
P P P G G G PP
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +3
Query: 813 PXXXPPGXXXKKTPPXXXGXXPPXPXKKXGGXXPKXTPXXXPXXEKXXXXKKXGXXXKPP 992
P PP K P G P P G P T P G PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 993 RXKXXPXXXXGKXFFXNXPGGKXXXXXGGGKTPP 1094
R P + + P G GG PP
Sbjct: 293 RAGSPPPPPPPR---GSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.79
Identities = 23/95 (24%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Frame = +2
Query: 824 PPRXXXKKNPPXXXXXGPPXPX*KXGXXXPKXHPPKXPPXGKXXXXKKXGXXXQ----TP 991
PP K +PP PP P P+ P PP G G +P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 992 PXKXXPFXXTXKXXFXXPPRGXXXXXXGGGXNXPP 1096
P P P G G G PP
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +3
Query: 813 PXXXPPGXXXKKTPPXXXGXXPPXPXKKXGGXXPKXTPXXXPXXEKXXXXKKXGXXXKPP 992
P PP K P G P P G P T P G PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 993 RXKXXPXXXXGKXFFXNXPGGKXXXXXGGGKTPP 1094
R P + + P G GG PP
Sbjct: 314 RAGSPPPPPPPR---GSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.79
Identities = 23/95 (24%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Frame = +2
Query: 824 PPRXXXKKNPPXXXXXGPPXPX*KXGXXXPKXHPPKXPPXGKXXXXKKXGXXXQ----TP 991
PP K +PP PP P P+ P PP G G +P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 992 PXKXXPFXXTXKXXFXXPPRGXXXXXXGGGXNXPP 1096
P P P G G G PP
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
Score = 31.5 bits (68), Expect = 1.4
Identities = 23/94 (24%), Positives = 25/94 (26%)
Frame = +3
Query: 813 PXXXPPGXXXKKTPPXXXGXXPPXPXKKXGGXXPKXTPXXXPXXEKXXXXKKXGXXXKPP 992
P PP K P G P P G P T P G PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 993 RXKXXPXXXXGKXFFXNXPGGKXXXXXGGGKTPP 1094
R P + + P G GG PP
Sbjct: 299 RAGSPPPPPPPR---GSPPTGSLPPPQAGGSPPP 329
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 31.9 bits (69), Expect = 1.0
Identities = 32/142 (22%), Positives = 39/142 (27%), Gaps = 1/142 (0%)
Frame = +3
Query: 501 PXXKG-GXXXGPPXFPPXGXXGXXSXXKXKXATXQXXGXXXFPPXPGXTXXKNXXXKGRK 677
P KG G PP P G + + + G PP P ++ +G
Sbjct: 98 PPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGS---PPPPPTGEPQDLSGEGNA 154
Query: 678 RXXXXKTAXGXGFFPKXPPPXEXXKXSTPXXKGXXPQXRXXXXXFPXXXPPGXXXKKTPP 857
G G P PP E ST P P P G +
Sbjct: 155 SRRPPPPPKGTGS-PPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAE 213
Query: 858 XXXGXXPPXPXKKXGGXXPKXT 923
PP P K G P T
Sbjct: 214 GYASRRPPPPPKGTGSPTPPPT 235
Score = 29.5 bits (63), Expect = 5.6
Identities = 31/142 (21%), Positives = 38/142 (26%), Gaps = 1/142 (0%)
Frame = +3
Query: 501 PXXKG-GXXXGPPXFPPXGXXGXXSXXKXKXATXQXXGXXXFPPXPGXTXXKNXXXKGRK 677
P KG G PP P G + + + G PP P ++ +G
Sbjct: 129 PPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGS---PPPPPTGEPQDLSTEGNA 185
Query: 678 RXXXXKTAXGXGFFPKXPPPXEXXKXSTPXXKGXXPQXRXXXXXFPXXXPPGXXXKKTPP 857
G G P PP E S P P P G +
Sbjct: 186 SRRPPPPPKGTGT-PPPPPTGEPQDLSAEGYASRRPPPPPKGTGSPTPPPTGEPQDLSGE 244
Query: 858 XXXGXXPPXPXKKXGGXXPKXT 923
PP P K G P T
Sbjct: 245 GNASRRPPPPPKGTGSPPPPPT 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,860
Number of Sequences: 27780
Number of extensions: 256628
Number of successful extensions: 434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3725590724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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