Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L12
         (1317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    29   1.9  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   5.8  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 441 WFWNNWLWDEH 473
           W+WNN  WD+H
Sbjct: 417 WYWNNGTWDDH 427


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 438 HWFWNNWLWDEH 473
           +WFWNN  WD++
Sbjct: 352 YWFWNNGTWDDN 363


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 420  WSCQTCHWFWNNWLWDEHIWD 482
            WSC +C+  ++ W+++E + D
Sbjct: 2102 WSCSSCNLVYDRWVFEETLVD 2122


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 648 AKTKSTETS*RFCTKSTAKSSGTESSCIQIAGT*SVRAKCWCCTRKCIGSSSK*TSPKCV 469
           A+ KS       C+K  +  S   S C Q   +     K  CC+++  G  S   +  C 
Sbjct: 214 AELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCS 273

Query: 468 RPKASC 451
           + K SC
Sbjct: 274 QEKKSC 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,598
Number of Sequences: 5004
Number of extensions: 57976
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)