Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L12
         (1317 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK223352-1|BAD97072.1|  507|Homo sapiens nucleoporin 54kDa varia...    84   9e-16
AK222752-1|BAD96472.1|  508|Homo sapiens nucleoporin 54kDa varia...    84   9e-16
AK001517-1|BAA91735.1|  484|Homo sapiens protein ( Homo sapiens ...    84   9e-16
AF157322-1|AAF67488.1|  505|Homo sapiens nucleoporin p54 protein...    84   9e-16
AK125511-1|BAC86188.1|  559|Homo sapiens rome) (ELN).  protein.        32   5.4  

>AK223352-1|BAD97072.1|  507|Homo sapiens nucleoporin 54kDa variant
            protein.
          Length = 507

 Score = 84.2 bits (199), Expect = 9e-16
 Identities = 39/103 (37%), Positives = 54/103 (52%)
 Frame = +1

Query: 760  VFGDERDQVLAKWNLIQAQWGTGQAYYXRNHPPLTLTXQNPXCRFKAXGYSXLCXKEXKD 939
            + GDERD +LAKWN +QA WGTG+ Y+  N PP+  T +NP CRFKA GYS +   + +D
Sbjct: 129  LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDED 188

Query: 940  GHVLXFXXKXXXKLXXTXKVXXHXXKAXXGTNXXLXXXXDSXK 1068
            G V+    K   ++    +          G N  L    +  K
Sbjct: 189  GLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTK 231


>AK222752-1|BAD96472.1|  508|Homo sapiens nucleoporin 54kDa variant
            protein.
          Length = 508

 Score = 84.2 bits (199), Expect = 9e-16
 Identities = 39/103 (37%), Positives = 54/103 (52%)
 Frame = +1

Query: 760  VFGDERDQVLAKWNLIQAQWGTGQAYYXRNHPPLTLTXQNPXCRFKAXGYSXLCXKEXKD 939
            + GDERD +LAKWN +QA WGTG+ Y+  N PP+  T +NP CRFKA GYS +   + +D
Sbjct: 130  LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDED 189

Query: 940  GHVLXFXXKXXXKLXXTXKVXXHXXKAXXGTNXXLXXXXDSXK 1068
            G V+    K   ++    +          G N  L    +  K
Sbjct: 190  GLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTK 232


>AK001517-1|BAA91735.1|  484|Homo sapiens protein ( Homo sapiens cDNA
            FLJ10655 fis, clone NT2RP2005933, weakly similar to
            NUCLEOPORIN NUP57. ).
          Length = 484

 Score = 84.2 bits (199), Expect = 9e-16
 Identities = 39/103 (37%), Positives = 54/103 (52%)
 Frame = +1

Query: 760  VFGDERDQVLAKWNLIQAQWGTGQAYYXRNHPPLTLTXQNPXCRFKAXGYSXLCXKEXKD 939
            + GDERD +LAKWN +QA WGTG+ Y+  N PP+  T +NP CRFKA GYS +   + +D
Sbjct: 129  LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDED 188

Query: 940  GHVLXFXXKXXXKLXXTXKVXXHXXKAXXGTNXXLXXXXDSXK 1068
            G V+    K   ++    +          G N  L    +  K
Sbjct: 189  GLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVSVEGTK 231


>AF157322-1|AAF67488.1|  505|Homo sapiens nucleoporin p54 protein
            protein.
          Length = 505

 Score = 84.2 bits (199), Expect = 9e-16
 Identities = 39/103 (37%), Positives = 54/103 (52%)
 Frame = +1

Query: 760  VFGDERDQVLAKWNLIQAQWGTGQAYYXRNHPPLTLTXQNPXCRFKAXGYSXLCXKEXKD 939
            + GDERD +LAKWN +QA WGTG+ Y+  N PP+  T +NP CRFKA GYS +   + +D
Sbjct: 128  LLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDED 187

Query: 940  GHVLXFXXKXXXKLXXTXKVXXHXXKAXXGTNXXLXXXXDSXK 1068
            G V+    K   ++    +          G N  L    +  K
Sbjct: 188  GLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTK 230


>AK125511-1|BAC86188.1|  559|Homo sapiens rome) (ELN).  protein.
          Length = 559

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 414 WIWSCQTCHWFWNNWLWDEHIWDWFIWNWIQ 506
           W WS     W W+ W W    W W   +W++
Sbjct: 527 WTWSWCRRPWTWS-WCWCSWTWSWCWCSWLR 556


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,230,883
Number of Sequences: 237096
Number of extensions: 2259810
Number of successful extensions: 3574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3556
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19045995580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)