Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L10
         (1323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1682 - 39130696-39131705,39132355-39132583                       38   0.018
11_06_0610 - 25449085-25453284                                         36   0.071
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    32   0.88 
12_02_1174 - 26696869-26698191                                         31   2.0  
06_01_0486 - 3455030-3455770                                           25   2.1  
01_01_0082 + 625198-625719                                             30   4.7  
08_01_0059 - 394001-394708                                             29   6.2  

>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 37.9 bits (84), Expect = 0.018
 Identities = 33/122 (27%), Positives = 42/122 (34%), Gaps = 2/122 (1%)
 Frame = -2

Query: 644 PXXPXPXHLHPXPSXXPPLP-RXXPXPXXXXXXPSYXXPLXSNTIXSFTSLXPXXXPXLX 468
           P  P      P     PPLP +  P P      PS+  P    +  S+ S  P       
Sbjct: 190 PPSPYQYPSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQS--SYHSPPPYQYTPPN 247

Query: 467 SXIITXXXXLXXXPPLXYXLPIPPXLXYXPXRLLXSAPPXPPYIHT-TTSPXLXVXLXHH 291
           S            PP  Y  PIPP   Y P     ++PP P Y H+   +  +   L H 
Sbjct: 248 SYQAPPTSYNHPPPPYGYNSPIPPTNKYLPPPYYFNSPP-PQYQHSPPANSYVSPPLAHQ 306

Query: 290 XP 285
            P
Sbjct: 307 YP 308


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 35.9 bits (79), Expect = 0.071
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
 Frame = -2

Query: 644  PXXPXPXHLHPXP--SXXPPLPRXXPXPXXXXXXPSYXXPLXSNTIXSFTSLXPXXXPXL 471
            P  P P  L P P  S  PP P   P P      P+    L    + S     P   P  
Sbjct: 1216 PPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPP 1275

Query: 470  XSXIITXXXXLXXXPPLXYXLPIPPXLXYXPXRLLXSAPPXP 345
                +     +   PP+   LP P  +   P  +    PP P
Sbjct: 1276 PVKSLPPPAPVSLPPPVVKSLPPPAPVSLPPPAVKPLPPPAP 1317


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 28/93 (30%), Positives = 30/93 (32%)
 Frame = -2

Query: 620  LHPXPSXXPPLPRXXPXPXXXXXXPSYXXPLXSNTIXSFTSLXPXXXPXLXSXIITXXXX 441
            L P P   PPLP   P P      P    PL S++      L P   P            
Sbjct: 1122 LPPLPDGPPPLPLDAPPPPPLPEGP---PPLPSDSPPCQPPLPPSPPPATPPPPPPLSPS 1178

Query: 440  LXXXPPLXYXLPIPPXLXYXPXRLLXSAPPXPP 342
            L   PP    LP  P     P  L    PP PP
Sbjct: 1179 LPPPPP-PPPLPSGPPPQPAPPPLPIQPPPIPP 1210


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 31/107 (28%), Positives = 35/107 (32%)
 Frame = -2

Query: 644 PXXPXPXHLHPXPSXXPPLPRXXPXPXXXXXXPSYXXPLXSNTIXSFTSLXPXXXPXLXS 465
           P  P P    P PS  PP P   P P      PS   P+         SL P   P    
Sbjct: 138 PHRPPPVKPQPPPSLPPPPP--PPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195

Query: 464 XIITXXXXLXXXPPLXYXLPIPPXLXYXPXRLLXSAPPXPPYIHTTT 324
              T    +   PP+    P PP     P     S PP PP +   T
Sbjct: 196 ---TRPPSV--KPPVVQPKPQPPPTLPPP-----SPPPPPPTVPPRT 232


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 25.4 bits (53), Expect(2) = 2.1
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -2

Query: 635 PXPXHLHPXPSXXPPLPRXXPXPXXXXXXPSYXXP 531
           P P      P   PP PR  P P      P Y  P
Sbjct: 68  PSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPP 102



 Score = 24.2 bits (50), Expect(2) = 2.1
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 428 PPLXYXLPIPPXLXYXPXRLLXSAPPXPPYIHTTTSP 318
           PP       PP   Y P  +    PP PPY+   T P
Sbjct: 97  PPYVPPYIPPPTPPYVPPYI---PPPTPPYVPPPTPP 130


>01_01_0082 + 625198-625719
          Length = 173

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 428 PPLXYXLPIPPXLXYXPXRLLXSAPPXPPY 339
           PP+ Y  P PP + Y P     +  P PPY
Sbjct: 69  PPVYYPPPSPPPVAYPPPTTPSTNCPPPPY 98


>08_01_0059 - 394001-394708
          Length = 235

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 647 LPXXPXPXHLHPXPSXXPPLPRXXPXPXXXXXXP 546
           +P  P P    P P+  PP PR  P P      P
Sbjct: 1   MPPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRP 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,887
Number of Sequences: 37544
Number of extensions: 183955
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4143716112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)