Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L08
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    38   0.003
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    31   0.36 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.47 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    29   1.9  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   2.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   4.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.8  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   7.6  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -2

Query: 233 KKKKXKKKSXXXXXXXKKKKKXXKXKKKXXKKKXKXRXKKNKXKXKKNKXKKXXK 69
           KKK  KK S       KK +K  K KKK  KKK K    K +     +K +K  K
Sbjct: 174 KKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228



 Score = 30.3 bits (65), Expect = 0.62
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 228 KKXKKKKXXXXXXXKKKKKKXXXKKKKXXKKXKXEXKKKQXXXKKK 91
           KK +K         KKK K+   KK+K     K E KKK+   K K
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDK 235



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 234 KKKKXKKKKXXXXXXXKKKKKKXXXKKKKXXKKXKXEXKKKQXXXKKK 91
           KKKK + KK       KK+K     K++K  KK K + K +     +K
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPESTSSVEK 244



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 236 KKKKKXKKKSXXXXXXXKKKKKXXKXKKKXXKKKXKXRXK 117
           KKKK+ KKK        KK+K     K++  KKK K + K
Sbjct: 198 KKKKEHKKKD--KESSSKKRKSGSSDKEEKKKKKIKLKDK 235



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 220 KKKKAXXXXXXXKKKKKXXXXKKKXXKKXKKXXKKKTXXXKKKTK 86
           K++K        K KKK         KK +K  KKK    KKK K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDK 208



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 219 KKKKXXXXXXXKKKKKKXXXKKKKXXKKXKXEXKKKQXXXKKKQXKKXXK 70
           K++K       KK KKK         KK +   KKK+   KKK  +   K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSK 213


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -2

Query: 236 KKKKKXKKKSXXXXXXXKKKKKXXKXKKKXXKKKXKXRXKKNKXKXKKNKXKKXXK 69
           KKKK  K K        K+KK+  K  KK  K K K    ++    KK K  K  K
Sbjct: 454 KKKKSSKLKEADGESSKKEKKE--KKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +1

Query: 88  LFFFXXXLFFFXLXFXFFXXFFFFXXXFFFFFFXXXXXXXLFFFXFFFF 234
           L FF   LFF  L F F   F FF    F  +F       +  F FFFF
Sbjct: 117 LLFFFFLLFF--LSFSFSFSFLFFLSQIFIVYF---SSFPILHFLFFFF 160



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +3

Query: 78  FFXFVFFXFXFVFFXSXFXFFFXXFFFXFXXFFFFFXXXXXXXAFFF 218
           FF    F F F+FF S     +   F      FFFF       +F F
Sbjct: 125 FFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +3

Query: 78  FFXFVFFXFXFVFFXSXFXFFFXXFFFXFXXFFFFFXXXXXXXAFFFXF 224
           F   + F F  +FF S F F F   FF    F  +F         FF F
Sbjct: 113 FRCLLLFFFFLLFFLS-FSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 233 KKKKXKKKSXXXXXXXKKKKKXXKXK---KKXXKKKXKXRXKKNKXKXKKNKXKK 78
           K++K KKK        K KKK  + K       K+K K R K++K K  K+  KK
Sbjct: 140 KREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESK-KSSKSGLKK 193


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 234 KKKKXKKKKXXXXXXXKKKKKKXXXKKKKXXKKXKXEXKKKQXXXKKKQ 88
           KK+K  +          KK++K   K+ K  KK K E K+K+   KKK+
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKK--EKKKK 472



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 236 KKKKKXKKKSXXXXXXXKKKKKXXKXKKK 150
           KK++K +KK        KK+KK  K KKK
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 75  PFFXFVFFXFXFVFFXSXFXFFFXXFFF 158
           PFF F F+   F FF   F      FFF
Sbjct: 106 PFFCFFFYFSLFSFFSFLFTSLHFNFFF 133


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 884 PPGGXPXXPPPPXF 843
           PPG  P  PPPP F
Sbjct: 5   PPGNPPPPPPPPGF 18


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/69 (17%), Positives = 32/69 (46%)
 Frame = -1

Query: 234 KKKKXKKKKXXXXXXXKKKKKKXXXKKKKXXKKXKXEXKKKQXXXKKKQXKKXXKXXXXX 55
           KK+  +K+K         +++K    +++  K+ + + K+K+   ++K+ K+  K     
Sbjct: 138 KKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFKDDPEE 197

Query: 54  XXXTTWGVL 28
                W ++
Sbjct: 198 DSNMAWSII 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,928
Number of Sequences: 5004
Number of extensions: 17820
Number of successful extensions: 263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)