Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L07
         (1306 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.52 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   1.2  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 825 PXXGXXKXGGXPPXGGGGXKPPXXPXGGXXXG 920
           P  G    GG  P GGGG      P GG   G
Sbjct: 200 PGAGGGGSGGGAPGGGGGSSGGPGPGGGGGGG 231



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 801 GKGGASXXPXXGXXKXGGXPPXGGGG 878
           G G     P  G    GG  P GGGG
Sbjct: 204 GGGSGGGAPGGGGGSSGGPGPGGGGG 229



 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 834 GXXKXGGXPPXGGGGXKPPXXPXGGXXXGK 923
           G    GG P  GGG    P    GG   G+
Sbjct: 204 GGGSGGGAPGGGGGSSGGPGPGGGGGGGGR 233


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -1

Query: 937 GPXPXXPXXXPPXGXXGGXFPPPPXGGXPPXFXXPXXG 824
           G  P  P   P      G  PPP  G  PP    P  G
Sbjct: 90  GMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMMVPTMG 127


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.312    0.149    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,128
Number of Sequences: 2352
Number of extensions: 9615
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 150418896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)