Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L06
         (1321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.20 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.82 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -1

Query: 667 PXXXPPXPXGXGXFXXXXXPPPPPPXXEKKXK 572
           P   PP P   G       PPPPPP   KK K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 667 PXXXPPXPXGXGXFXXXXXPPPPPP 593
           P   PP P     F     PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = -1

Query: 760 NPXSPLXGXXTPXPPPKPXXXGFFXGXRGXGPXXXPPXPXGXGXFXXXXXPPPPPP 593
           +P  P      P P P P          G GP   PP P   G       PPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMG-GPPPPPPPP---GVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.82
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = -1

Query: 757 PXSPLXGXXTPXPPPKPXXXGFFXGXRGXGPXXXPPXPXGXGXFXXXXXPPPPPPXXEKK 578
           P +P+ G   P PPP         G  G GP   PP P            P P    E K
Sbjct: 753 PPAPIMGGPPPPPPPP--------GVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.155    0.546 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,947
Number of Sequences: 5004
Number of extensions: 29235
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)