Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L05
         (1281 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase...   171   2e-42
BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p pro...   171   2e-42
AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA ...   171   2e-42

>Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase
           subunit protein.
          Length = 131

 Score =  171 bits (415), Expect = 2e-42
 Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
 Frame = +1

Query: 238 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 414
           N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35  NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94

Query: 415 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 522
           IAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95  IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p
           protein.
          Length = 131

 Score =  171 bits (415), Expect = 2e-42
 Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
 Frame = +1

Query: 238 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 414
           N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35  NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94

Query: 415 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 522
           IAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95  IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA
           protein.
          Length = 131

 Score =  171 bits (415), Expect = 2e-42
 Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
 Frame = +1

Query: 238 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 414
           N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35  NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94

Query: 415 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 522
           IAMKELK  KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95  IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,546,123
Number of Sequences: 53049
Number of extensions: 621984
Number of successful extensions: 997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6906482595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)