Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L03
         (1291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   5.6  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    27   7.4  
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc...    26   9.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   9.8  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +3

Query: 15  YRESLRSHSGFXSCRLMKSYSRK*LQSLILKGNYVNIIRVQIQHLVHVWTH--FGMSG-- 182
           Y ES   +S F  C    SYS   + +  L G   N+ + +I H   V+TH    ++G  
Sbjct: 791 YEES--ENSSFWKCDKDASYSSLDVSNDSLLGRTKNLQKREIMHHAEVYTHKKISLTGHV 848

Query: 183 VATSKMFLKLN 215
           + TS   L+L+
Sbjct: 849 IITSTEMLELS 859


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 104 KRKLCKYYSSANTTFSACLDPFRYEWGGHI 193
           K +L    S+ +  FSA  D  R +WGG I
Sbjct: 208 KNELASIVSAVDANFSAKYDESRRKWGGGI 237


>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 646 YSPNVSYALSSDEYGSPAYRS 708
           +S + ++ LSS EY  P YRS
Sbjct: 106 FSSSKTFVLSSQEYAQPLYRS 126


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 103  KIKDCNYFREYDFIRRQEXKPEW 35
            K +D  Y++ Y F+   E  PEW
Sbjct: 2235 KTRDSCYYKRYMFVFDDELSPEW 2257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,415
Number of Sequences: 5004
Number of extensions: 60844
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)