Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L02
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...   187   2e-48
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   2.3  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   2.3  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   5.4  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    27   7.1  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score =  187 bits (456), Expect = 2e-48
 Identities = 100/229 (43%), Positives = 141/229 (61%), Gaps = 2/229 (0%)
 Frame = +1

Query: 115 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN--VE 288
           MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+T+ +   +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 289 VLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNT 468
           VL+TLT D G+ +S +H +   G+     GI+IA LALKHR+ K  + RIV FVGSP+  
Sbjct: 61  VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120

Query: 469 DEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGG 648
           DEK L++LAKR+KK  V  D++  GE  +N   L  F++  N  D+     HLVS+P   
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGE-LQNESALQHFIDAANSSDS----CHLVSIPP-- 173

Query: 649 CVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVSM 795
               S  L++                  FE+GVDPN+D ELALAL +SM
Sbjct: 174 ----SPQLLSDLVNQSPIGQGVVASQNQFEYGVDPNLDVELALALELSM 218


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 175 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 339
           F P+RL   +  V L   S +  + EN++ +  L N  +L  +   + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 517 VNCDVVSFGEDSENNPLLTTFVNTLNG 597
           VN ++VS  ED++    L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 451 GSPVNTDEKELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLN 594
           GS ++ DE       +  +++  N D+++F    +N PLLT  +++L+
Sbjct: 4   GSKLSEDETFSQTFNEEEQEDSRNKDILAFDPSVDNEPLLTKKLSSLS 51


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 348
           T + P+N+ V +L     E++ATLT +   +  ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,007,462
Number of Sequences: 5004
Number of extensions: 75245
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)