Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_L02
         (1240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...   168   7e-42

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score =  168 bits (409), Expect = 7e-42
 Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 6/230 (2%)
 Frame = +1

Query: 121 LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 294
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 295 ATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNTDE 474
              TSD  + ++ +H ++ +G+ NL   + IA L LK+R  K    RIVVFVGSPV  DE
Sbjct: 65  LAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVK-DE 123

Query: 475 KELVKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG-SHLVSVPAG-- 645
           K L  + K+LKK  V+ DVV FGE  +  P        L     + GG SH+V +P G  
Sbjct: 124 K-LETIGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVGGSSHIVHIPPGED 176

Query: 646 -GCVVLSEALITSXXXXXXXXXXXXXXXXXFEFGVDPNVDPELALALRVS 792
              V+ +  +IT                  +E+ VDPNVDPE A ALR+S
Sbjct: 177 LRAVLANTPIITG----DEGGGAAAGGASRYEYNVDPNVDPEFAEALRLS 222



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 733 FEFGVDPNVDPELALALRVS 792
           +E+ VDPN DPELA   R++
Sbjct: 237 YEYSVDPNADPELAETFRLA 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,698,322
Number of Sequences: 37544
Number of extensions: 510800
Number of successful extensions: 1016
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)