Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K22
(1326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 46 1e-05
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.27
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.82
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 46.0 bits (104), Expect = 1e-05
Identities = 45/158 (28%), Positives = 48/158 (30%), Gaps = 1/158 (0%)
Frame = +1
Query: 601 PSXSPPXDXLXPXXRXGXXVSXPPKGXXRXSPKSGXNPGKNXXPKGP-QXAXNRKKAXXX 777
PS S P P G VS PP R NP N K P +R A
Sbjct: 246 PSLSAPAPPPIPPPSNGT-VSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAAL 304
Query: 778 AFXXRXXPPDXXPKXRPPXXRGXXPTGLXXSXAXPPXXPXXXPPXXXPXXLPXXXPXXPP 957
A + PP P R RG P G S + P PP P PP
Sbjct: 305 AANKKRPPPPPPPSRR---NRGKPPIGNGSSNSSLP------PPPPPPRSNAAGSIPLPP 355
Query: 958 XGXXGPXPXPPPXXXPXXXXXXXPPXXGXXXXXPPXXP 1071
G P P PPP P P PP P
Sbjct: 356 QGRSAP-PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 37.9 bits (84), Expect = 0.003
Identities = 36/158 (22%), Positives = 43/158 (27%), Gaps = 3/158 (1%)
Frame = +1
Query: 568 PPGKGGXXFGXPSXSPPXDXLXPXXRXGXXVSXPPKGXXRXSP---KSGXNPGKNXXPKG 738
P G G P PP P + PP+G P +S + G+ P
Sbjct: 326 PIGNGSSNSSLPPPPPP-----PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380
Query: 739 PQXAXNRKKAXXXAFXXRXXPPDXXPKXRPPXXRGXXPTGLXXSXAXPPXXPXXXPPXXX 918
A + A A R P PT + PP P PP
Sbjct: 381 SSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL- 439
Query: 919 PXXLPXXXPXXPPXGXXGPXPXPPPXXXPXXXXXXXPP 1032
P P P P P P P P PP
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 35.5 bits (78), Expect = 0.017
Identities = 29/136 (21%), Positives = 35/136 (25%), Gaps = 1/136 (0%)
Frame = +1
Query: 667 PPKGXXRXSPKSGX-NPGKNXXPKGPQXAXNRKKAXXXAFXXRXXPPDXXPKXRPPXXRG 843
PP R P G + + P P N + R PP P+ P R
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 844 XXPTGLXXSXAXPPXXPXXXPPXXXPXXLPXXXPXXPPXGXXGPXPXPPPXXXPXXXXXX 1023
P + + PP P P P P P PP P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 1024 XPPXXGXXXXXPPXXP 1071
P PP P
Sbjct: 436 PPSLPMGAPAAPPLPP 451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.27
Identities = 23/97 (23%), Positives = 23/97 (23%)
Frame = +1
Query: 829 PXXRGXXPTGLXXSXAXPPXXPXXXPPXXXPXXLPXXXPXXPPXGXXGPXPXPPPXXXPX 1008
P G P A P P PP P P P P P P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPV 1191
Query: 1009 XXXXXXPPXXGXXXXXPPXXPXXXGPXXGXXXXXXPP 1119
PP PP P P PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 27.1 bits (57), Expect = 5.8
Identities = 28/108 (25%), Positives = 29/108 (26%), Gaps = 1/108 (0%)
Frame = +3
Query: 600 PFRFPXX*XPXPGXSXGGXGXXXPKGGXTVX-PXIRGXPRKKXXTQRPXXGXXPXKGXVA 776
P P P P S P G V P + P P G P A
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP-----VPAPSSGIPPVPKPAA 1186
Query: 777 GVXPXAPPPXXXSQXXTPXSXGXXPXXTXXIPGXXPXXPPXXPPXXXP 920
GV P PPP P S G P P PP P
Sbjct: 1187 GVPP-VPPPSEAPPVPKP-SVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.82
Identities = 24/99 (24%), Positives = 26/99 (26%)
Frame = +1
Query: 799 PPDXXPKXRPPXXRGXXPTGLXXSXAXPPXXPXXXPPXXXPXXLPXXXPXXPPXGXXGPX 978
PP + RPP P+ S A P P PP P LP P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP--IPSSLPPPAQPAAPVKSPPSA 187
Query: 979 PXPPPXXXPXXXXXXXPPXXGXXXXXPPXXPXXXGPXXG 1095
P P P PP P P G
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAG 226
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Frame = +3
Query: 762 KGXVAGVXPXAP-PPXXXSQXXTPXSXGXXPXXTXXIPGXXPXXPPXXPP 908
K + P AP PP S+ P S P P P P PP
Sbjct: 117 KSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 880 PPXXPXXXPPXXXPXXLPXXXPXXPPXGXXGPXPXPPPXXXPXXXXXXXPP 1032
PP P P P +P P P G GP P PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIP-VPPPAPIMG--GPPPPPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +1
Query: 880 PPXXPXXXPPXXXPXXLPXXXPXXPPXGXXGPXPXPPPXXXP 1005
P P P + P PP G G P PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,684
Number of Sequences: 5004
Number of extensions: 32185
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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