Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K21
(1327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.26
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 33 0.45
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 32 0.79
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.4
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.4
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 7.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical ... 29 9.7
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.26
Identities = 22/73 (30%), Positives = 23/73 (31%)
Frame = -3
Query: 509 PXPXXRGXRXXXXXXXPXPRPPXPXXXXXPXSPPPXXPKHXPPLXXEHXXNXIPRXXXKK 330
P P R R P P PP P SPPP P PP P +
Sbjct: 124 PPPPPRKSRAGGSSPPPPP-PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRN 182
Query: 329 GXPXRLPKXQXPP 291
P R P PP
Sbjct: 183 --PPRTPPSPIPP 193
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 33.1 bits (72), Expect = 0.45
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 455 PRPPXPXXXXXPXSPPPXXPKHXPP 381
PRPP P P PPP P+ PP
Sbjct: 34 PRPPRPPSPSRPQRPPPSRPQRPPP 58
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 32.3 bits (70), Expect = 0.79
Identities = 22/57 (38%), Positives = 25/57 (43%)
Frame = +1
Query: 292 GGNXXFGNRXGLPFXXXXRGXXFXXCSXXRGGXCXGXXGGGEXGXXXXXGXGGRGXG 462
GG+ G+R G + RG S RGG G GGG G G GGRG G
Sbjct: 13 GGSSGGGSRGG--YGGGGRGGGGGGYSGGRGGGYGGGGGGGYGG--GGYGGGGRGGG 65
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 367 CSXXRGGXCXGXXGGGEXGXXXXXGXGGRGXG 462
C GG C G GGG G G GG G G
Sbjct: 133 CGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCG 164
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 382 GGXCXGXXGGGEXGXXXXXGXGGRGXG 462
GG C G GGG G G GG G G
Sbjct: 126 GGGCGGGCGGGGGGGCGGGGGGGCGGG 152
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.5 bits (68), Expect = 1.4
Identities = 27/80 (33%), Positives = 27/80 (33%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLPFXXXXRGXXFXXCSXXRGGXCXGX 402
GGG G GG GGN GN G G RGG G
Sbjct: 65 GGGRGGGWGNNGGGGNW------GGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG--GG 116
Query: 403 XGGGEXGXXXXXGXGGRGXG 462
GGG G G GGRG G
Sbjct: 117 GGGGRGGGGGGRGGGGRGRG 136
Score = 31.1 bits (67), Expect = 1.8
Identities = 26/80 (32%), Positives = 27/80 (33%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLPFXXXXRGXXFXXCSXXRGGXCXGX 402
GGG G GG GG +G G RG RGG G
Sbjct: 58 GGGGSGWGGGRGGGWGN-----NGGGGNWGGNGGGGNGGGGRGGGGGG-GGGRGGGGGGR 111
Query: 403 XGGGEXGXXXXXGXGGRGXG 462
GGG G G GGRG G
Sbjct: 112 GGGGGGGGGRGGGGGGRGGG 131
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Frame = -3
Query: 461 PXPRPPXPXXXXXPXSPPPXXPKHXPPLXXEHXXNXIPRXXXKKGXPXRLPKXQ-XPPXL 285
P P P P P PPP PP P G P P + PP +
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPP-PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 330
Query: 284 SYXGXXXPPXSXXXGPXXPPP 222
PP G PPP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPP 351
Score = 29.9 bits (64), Expect = 4.2
Identities = 24/85 (28%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Frame = -3
Query: 461 PXPRPPXPXXXXXPXSPPPXXPKHXPPLXXEHXXNXIPRXXXKKGXPXRLPKXQXPPXLS 282
P P PP P PPP PP P G P PP +
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP--PPPPGMR 342
Query: 281 YXGXXXPP-----XSXXXGPXXPPP 222
Y G PP S G PPP
Sbjct: 343 YPGGMPPPPPPRYPSAGPGMYPPPP 367
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/89 (25%), Positives = 24/89 (26%)
Frame = -2
Query: 636 PXXXPXXXXXPXXXPPPXXXXXXXPXXXXXXXXPPXXXXXPXXXXXXPGAAXXXXXXXPX 457
P P P PP P PP P PG P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG--------MPG 315
Query: 456 XPPPXPLXXXXAXFPPXXXTXTXPPPXPG 370
PPP P + F P PPP PG
Sbjct: 316 MPPPPP----PSRFGPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Frame = -3
Query: 461 PXPRPPXPXXXXXPXSPPPXXPKHXPPLXXEHXXNXIPRXXXKKGXPXRLPKXQ-XPPXL 285
P P P P P PPP PP P G P P + PP +
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPP-PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGM 340
Query: 284 SYXGXXXPPXSXXXGPXXPPP 222
PP G PPP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPP 361
Score = 29.9 bits (64), Expect = 4.2
Identities = 24/85 (28%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Frame = -3
Query: 461 PXPRPPXPXXXXXPXSPPPXXPKHXPPLXXEHXXNXIPRXXXKKGXPXRLPKXQXPPXLS 282
P P PP P PPP PP P G P PP +
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP--PPPPGMR 352
Query: 281 YXGXXXPP-----XSXXXGPXXPPP 222
Y G PP S G PPP
Sbjct: 353 YPGGMPPPPPPRYPSAGPGMYPPPP 377
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/89 (25%), Positives = 24/89 (26%)
Frame = -2
Query: 636 PXXXPXXXXXPXXXPPPXXXXXXXPXXXXXXXXPPXXXXXPXXXXXXPGAAXXXXXXXPX 457
P P P PP P PP P PG P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG--------MPG 325
Query: 456 XPPPXPLXXXXAXFPPXXXTXTXPPPXPG 370
PPP P + F P PPP PG
Sbjct: 326 MPPPPP----PSRFGPPGMGGMPPPPPPG 350
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 3.2
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Frame = -3
Query: 413 PPPXXPKHXPPLXXEHXXNXIPR----XXXKKGXPXRLPKXQXPPXLSYXGXXXPPXSXX 246
PPP PK PPL P + G P P PP + G PP
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPPRAG 295
Query: 245 XGPXXPPP 222
P PPP
Sbjct: 296 SPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 3.2
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Frame = -3
Query: 413 PPPXXPKHXPPLXXEHXXNXIPR----XXXKKGXPXRLPKXQXPPXLSYXGXXXPPXSXX 246
PPP PK PPL P + G P P PP + G PP
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPPRAG 316
Query: 245 XGPXXPPP 222
P PPP
Sbjct: 317 SPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 3.2
Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Frame = -3
Query: 413 PPPXXPKHXPPLXXEHXXNXIPR----XXXKKGXPXRLPKXQXPPXLSYXGXXXPPXSXX 246
PPP PK PPL P + G P P PP + G PP
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA--GGSPPPPRAG 301
Query: 245 XGPXXPPP 222
P PPP
Sbjct: 302 SPPPPPPP 309
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.5 bits (63), Expect = 5.6
Identities = 22/81 (27%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Frame = -3
Query: 455 PRPPXPXXXXXPXSPP---PXXPKHXP-PLXXEHXXNXIPRXXXKKGXPXRLPKXQXPPX 288
P P P P PP P P P P P P P PP
Sbjct: 195 PGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPT 254
Query: 287 LSYXGXXXPPXSXXXGPXXPP 225
G PP GP PP
Sbjct: 255 RRPPGPPGPPTRRPPGPPGPP 275
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/80 (28%), Positives = 23/80 (28%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLPFXXXXRGXXFXXCSXXRGGXCXGX 402
GGG G GG GG G G G C G C G
Sbjct: 99 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Query: 403 XGGGEXGXXXXXGXGGRGXG 462
GGG G G GG G
Sbjct: 159 GGGG-CGGGGGGGCGGGSSG 177
Score = 28.7 bits (61), Expect = 9.7
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLP--FXXXXRGXXFXXCSXXRGGXCX 396
GGG G GG GG G+ G G C GG C
Sbjct: 113 GGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCG 172
Query: 397 GXXGGGEXGXXXXXGXGGRGXG 462
G GG G GG G G
Sbjct: 173 GGSSGGGGYAVAPSGGGGCGGG 194
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 7.4
Identities = 23/80 (28%), Positives = 23/80 (28%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLPFXXXXRGXXFXXCSXXRGGXCXGX 402
GGG G GG GG G G G C G C G
Sbjct: 99 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGG 158
Query: 403 XGGGEXGXXXXXGXGGRGXG 462
GGG G G GG G
Sbjct: 159 GGGG-CGGGGGGGCGGGSSG 177
Score = 28.7 bits (61), Expect = 9.7
Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Frame = +1
Query: 223 GGGXXGPXXXXXGGXXXPI*XXXGGNXXFGNRXGLP--FXXXXRGXXFXXCSXXRGGXCX 396
GGG G GG GG G+ G G C GG C
Sbjct: 113 GGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCG 172
Query: 397 GXXGGGEXGXXXXXGXGGRGXG 462
G GG G GG G G
Sbjct: 173 GGSSGGGGYAVAPSGGGGCGGG 194
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 26.6 bits (56), Expect(2) = 7.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -1
Query: 448 PXPPXXXXCPXPPXQXNXNTPPPXP 374
P PP P PP PPP P
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPP 99
Score = 20.6 bits (41), Expect(2) = 7.8
Identities = 8/24 (33%), Positives = 9/24 (37%)
Frame = -1
Query: 292 PXXPIXGXXTPPXQXXXGRXXPPP 221
P P+ G PP PPP
Sbjct: 96 PPPPMMGGIPPPPPMFGAPPPPPP 119
>AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical
protein F53C3.6a protein.
Length = 250
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 379 RGGXCXGXXGGGEXGXXXXXGXGGRGXG 462
RGG G GGG G GGRG G
Sbjct: 22 RGGRGRGGGGGGRGSSGARGGVGGRGGG 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,186,200
Number of Sequences: 27780
Number of extensions: 131148
Number of successful extensions: 1125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3715184046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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