Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K18
(1358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.39
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 32 1.2
02_04_0170 + 20576149-20576889 32 1.2
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 31 2.1
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 30 4.9
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 30 4.9
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 30 4.9
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 30 4.9
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 4.9
08_01_0059 - 394001-394708 29 8.5
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.5 bits (73), Expect = 0.39
Identities = 24/73 (32%), Positives = 25/73 (34%)
Frame = -1
Query: 1283 GXXXPVXRGXXXGGXXXFXPGGXXXXXXXRVXGPPGXG*TGGXXAPXPXXGGGGPXXRXW 1104
G P G GG GG + PPG G G P GGGG R
Sbjct: 129 GARPPAPGGGGGGGAPRRVLGGGGGGGA--LARPPGGGRGGALGRPPGGGGGGGGPGRAP 186
Query: 1103 XTXXXGGXXGRAP 1065
GG GRAP
Sbjct: 187 GGGGGGGGPGRAP 199
Score = 32.3 bits (70), Expect = 0.91
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -1
Query: 1247 GGXXXFXPGGXXXXXXXRVXGPPGXG*TGGXXAPXPXXGGGGPXXRXWXTXXXGG 1083
GG PGG + PPG G GG P P GGGG R GG
Sbjct: 102 GGGGARPPGGGGGGGPPSL--PPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Score = 31.9 bits (69), Expect = 1.2
Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Frame = -1
Query: 1283 GXXXPVXRGXXXGGXXXFXPGGXXXXXXXRVXGPPGXG*TGGXX--APXPXXGGGGPXXR 1110
G V G GG PGG R PPG G GG AP GGGGP
Sbjct: 142 GAPRRVLGGGGGGGALARPPGGGRGGALGR---PPGGGGGGGGPGRAPGGGGGGGGPGRA 198
Query: 1109 XWXTXXXGGXXG 1074
GG G
Sbjct: 199 PGGGGGGGGLGG 210
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 1127 PPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKT 1234
PPQ G W P P P P G PP KT
Sbjct: 231 PPQAGTWPLPAPAAMPPPPPPPTGAAAVAPPPSLKT 266
>02_04_0170 + 20576149-20576889
Length = 246
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 1127 PPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKT 1234
PPQ G W P P P P G PP KT
Sbjct: 112 PPQAGTWPLPAPAAMPPPPPPPTGAAAVAPPPSLKT 147
>04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +2
Query: 1064 RGPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXX 1243
+GPF PP P PP G + P F P P + PP
Sbjct: 143 QGPFGTAPPPSQGPFAASV--PPSQGPFASAQPPFRPPPSLVQSPTASGMAPPSAYVRPP 200
Query: 1244 PP 1249
PP
Sbjct: 201 PP 202
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 121 KTRKNFVPHYSKFSY-PKLHKCFRSENNSRXLK 26
+TRKNF+P YSK + P +H SE + K
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFK 513
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 121 KTRKNFVPHYSKFSY-PKLHKCFRSENNSRXLK 26
+TRKNF+P YSK + P +H SE + K
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFK 587
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 121 KTRKNFVPHYSKFSY-PKLHKCFRSENNSRXLK 26
+TRKNF+P YSK + P +H SE + K
Sbjct: 64 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFK 96
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 121 KTRKNFVPHYSKFSY-PKLHKCFRSENNSRXLK 26
+TRKNF+P YSK + P +H SE + K
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFK 655
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 4.9
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P P P G +PP+ G P P P PG PP P
Sbjct: 160 GPKPKPKPSPPKPKPGPKPKPPKPG----------PKPKPPKPGPKPKPKPPKPGPKPKP 209
Query: 1247 PGXXPGXXXXP 1279
PG P
Sbjct: 210 KPPKPGPKPKP 220
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +3
Query: 1071 PSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTPTRXXXXPGXXXXXXPPXXKXXXXPX 1250
P P P P APP PP TP P PP P
Sbjct: 6 PPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPV 65
Query: 1251 XXPP 1262
PP
Sbjct: 66 PPPP 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,246,580
Number of Sequences: 37544
Number of extensions: 487620
Number of successful extensions: 1171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4283391936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -