Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K18
(1358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 33 0.35
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 33 0.35
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.62
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.62
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.62
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 1.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 1.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 1.1
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 5.7
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 7.6
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 7.6
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 7.6
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical protein
C02C6.1a protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.35
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P P P PP+ G P P P PG + PP T P
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPG--APGGGGGMYPPLIPTRPGP 819
Query: 1247 PGXXP 1261
G P
Sbjct: 820 GGPPP 824
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.35
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P P P PP+ G P P P PG + PP T P
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPG--APGGGGGMYPPLIPTRPGP 819
Query: 1247 PGXXP 1261
G P
Sbjct: 820 GGPPP 824
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP 1175
PP+ GGP P P P G PP GC PP P
Sbjct: 736 PPIT--GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 3.3
Identities = 22/71 (30%), Positives = 22/71 (30%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P PP P G PP G P P P PG PP P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISG--GPPPPPPPPGGCPPPPPP------PP 776
Query: 1247 PGXXPGXXXXP 1279
PG G P
Sbjct: 777 PGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP 1175
PP+ GGP P P P G PP GC PP P
Sbjct: 736 PPIT--GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 3.3
Identities = 22/71 (30%), Positives = 22/71 (30%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P PP P G PP G P P P PG PP P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISG--GPPPPPPPPGGCPPPPPP------PP 776
Query: 1247 PGXXPGXXXXP 1279
PG G P
Sbjct: 777 PGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.62
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP 1175
PP+ GGP P P P G PP GC PP P
Sbjct: 319 PPIT--GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 30.3 bits (65), Expect = 3.3
Identities = 22/71 (30%), Positives = 22/71 (30%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P PP P G PP G P P P PG PP P
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISG--GPPPPPPPPGGCPPPPPP------PP 359
Query: 1247 PGXXPGXXXXP 1279
PG G P
Sbjct: 360 PGGFKGGPPPP 370
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/99 (26%), Positives = 29/99 (29%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTPTRXXXXPGXXXXXXPPX 1226
PPL G P P P G P P +PP G PP P P PP
Sbjct: 247 PPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPP- 300
Query: 1227 XKXXXXPXXXPPXXXXXXXXXFXGXXXXXXGGPPXXPKK 1343
P PP G PP P++
Sbjct: 301 ----PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 335
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/69 (26%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Frame = +3
Query: 1065 GGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXS---TPTRXXXXPGXXXXXXPPXXKX 1235
G P P P P G PP G PP + P P PP +
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 294
Query: 1236 XXXPXXXPP 1262
P PP
Sbjct: 295 GSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/99 (26%), Positives = 29/99 (29%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTPTRXXXXPGXXXXXXPPX 1226
PPL G P P P G P P +PP G PP P P PP
Sbjct: 268 PPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPP- 321
Query: 1227 XKXXXXPXXXPPXXXXXXXXXFXGXXXXXXGGPPXXPKK 1343
P PP G PP P++
Sbjct: 322 ----PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 356
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/69 (26%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Frame = +3
Query: 1065 GGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXS---TPTRXXXXPGXXXXXXPPXXKX 1235
G P P P P G PP G PP + P P PP +
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 315
Query: 1236 XXXPXXXPP 1262
P PP
Sbjct: 316 GSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 1.1
Identities = 26/99 (26%), Positives = 29/99 (29%)
Frame = +3
Query: 1047 PPLREXGGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTPTRXXXXPGXXXXXXPPX 1226
PPL G P P P G P P +PP G PP P P PP
Sbjct: 253 PPLAGSGSPPP--PPAAGSPPPPRTGSPPPPPTGSPPPP---PAGGSPPPPRAGSPPPP- 306
Query: 1227 XKXXXXPXXXPPXXXXXXXXXFXGXXXXXXGGPPXXPKK 1343
P PP G PP P++
Sbjct: 307 ----PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 341
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/69 (26%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Frame = +3
Query: 1065 GGPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXS---TPTRXXXXPGXXXXXXPPXXKX 1235
G P P P P G PP G PP + P P PP +
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 300
Query: 1236 XXXPXXXPP 1262
P PP
Sbjct: 301 GSPPPPPPP 309
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical protein
C02C6.1b protein.
Length = 838
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P P P PP+ G P P P PG + PP T
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPG--APGGGGGMYPPLIPTRVPT 819
Query: 1247 P 1249
P
Sbjct: 820 P 820
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 1067 GPFPXXPPXXXXPXXGXXXRPPQXGXWVXXXPXFNPXPXXPXPGXXXXLXPPXXKTXXXP 1246
GP P P P PP+ G P P P PG + PP T
Sbjct: 762 GPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPG--APGGGGGMYPPLIPTRVPT 819
Query: 1247 P 1249
P
Sbjct: 820 P 820
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +3
Query: 1068 GPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP-TRXXXXPGXXXXXXPPXXKXXXX 1244
GP P P G P P PP G G P + P PP
Sbjct: 88 GPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAA 147
Query: 1245 PXXXPP 1262
P PP
Sbjct: 148 PIVPPP 153
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +3
Query: 1068 GPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP-TRXXXXPGXXXXXXPPXXKXXXX 1244
GP P P G P P PP G G P + P PP
Sbjct: 111 GPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAA 170
Query: 1245 PXXXPP 1262
P PP
Sbjct: 171 PIVPPP 176
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/66 (27%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Frame = +3
Query: 1068 GPSPXXPXXXGXPXPGXXXAPPXXGXGCXXPPXSTP-TRXXXXPGXXXXXXPPXXKXXXX 1244
GP P P G P P PP G G P + P PP
Sbjct: 361 GPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTSSAAA 420
Query: 1245 PXXXPP 1262
P PP
Sbjct: 421 PIVPPP 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,542,213
Number of Sequences: 27780
Number of extensions: 396594
Number of successful extensions: 979
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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