Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K17
         (1338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.48 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.83 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 23/81 (28%), Positives = 23/81 (28%)
 Frame = -1

Query: 582 GGAPXGPPXXPXXGXXXXGLXXXEXXXGGXXFXGGXXGGKXXXXXKXXXGXGXXPPXXGX 403
           GG   GPP  P       G        GG    GG  GG          G G  P   G 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG----FEGGPGGFGGGPGGFGG 249

Query: 402 XXXXXXGXXGGXXXXPXGXPG 340
                 G  GG    P G  G
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGG 270


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 33/136 (24%), Positives = 34/136 (25%), Gaps = 2/136 (1%)
 Frame = +2

Query: 341  PGXPXGXXXXPP-KXPXXXXXXXPXXGGKXPXPXXFFXXXXXFPPXXPPXKXXPPXXXSX 517
            P  P      PP   P       P   G  P P          PP   P    P    S 
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA----PPVPVPSGAPPVPKPSV 1147

Query: 518  XFXPXXXXPXXGXXGGPX-GAPPXXXXKKGXKKXPPXXXGGPPXFXPKKXXPXFWGGXPF 694
               P            P   APP      G    P    G PP   P +  P      P 
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP-----VPK 1202

Query: 695  XPXXTPPXXPPKXXPP 742
                 PP  PP   PP
Sbjct: 1203 PSVGVPPVPPPSTAPP 1218



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/44 (29%), Positives = 15/44 (34%)
 Frame = +3

Query: 708  PPPXXPPKXXPPKXKNXXFXXKKXXPPXKNPPXXXGKXPFSRXP 839
            P P  PP   PP   +         PP  +PP      P S  P
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSP 1004


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,423
Number of Sequences: 5004
Number of extensions: 29271
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)