Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K17
         (1338 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.23 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   0.93 

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
 Frame = +2

Query: 560 GGPXGAPPXXXXKKGXKKXPPXXXGGP------PXFXPKKXXPXFWGGXPFXPXXTPPXX 721
           GGP G PP           PP     P      P F        F  G P  P   PP  
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPA 584

Query: 722 PPKXXP 739
           PP   P
Sbjct: 585 PPPPPP 590



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 967  GGXXKXXPPPPXGGEKXXXPQXXXXPP 1047
            GG     PPPP GG     P     PP
Sbjct: 525  GGPLGPPPPPPPGGAVLNIPPQFLPPP 551



 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 675 FGGXPXSXPXXPPPXXPPKXXPP 743
           F   P + P   PP  PP   PP
Sbjct: 573 FPNLPNAQPPPAPPPPPPMGPPP 595


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
 Frame = +2

Query: 542 PXXGXXGGPXGAPPXXXXKKGXKKXPPXXXGGPPXFXPKKXXPXF-WGGXPFXPXXTPPX 718
           P  G   G  GAPP      G    P      PP   P    P    G  P      PP 
Sbjct: 87  PRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMMVPTMGMPPMGLGMRPPVMSAAPPQ 146

Query: 719 XPPK 730
             PK
Sbjct: 147 LNPK 150


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,685
Number of Sequences: 2352
Number of extensions: 10705
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 153617310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)