Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K16
(1326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.47
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 3.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 3.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.47
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 794 PPSPPXXXGXPXPTP-PGXXPPPXGGXXPXRGGGXKPPP 907
PP PP P P P P PPP P GG PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA----PIMGGPPPPPP 766
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 450 GPPPPPPXKXXPPPXXGGGGGXXPP 524
GPPPPP PPP G G PP
Sbjct: 760 GPPPPP-----PPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 450 GPPPPPPXKXXPPPXXGGGG 509
GPPPPPP PPP GG
Sbjct: 774 GPPPPPP----PPPAVSAGG 789
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 770 TPXKKKXXPPSPPXXXGXPXPTPPGXXPPPXGGXXPXRGGGXKPPPXXXGGG 925
TP P P G P P PP PP G P PPP GG
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPP---PPGVAGAGPP--PPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Frame = -3
Query: 640 LKXPPXXPFXXXXPLGXXXXXFFFXVPPP---FXGXXXPPPX---GGXXPPPPP 497
LK PP P P VPPP G PPP G PPPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAP---IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Frame = -2
Query: 923 PPPXXXGGVXPPPP-----GXGXPPP 861
PP GG PPPP G G PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = -2
Query: 923 PPPXXXGGVXPPPPGXGXPPPXGGEXPXGGXXXXPXXXXGG 801
PPP G PPPP PP G P P GG
Sbjct: 752 PPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 783 KKXPPPPPPXXXGXPXXPPXG 845
KK PPPPPP PP G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIG 328
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 800 SPPXXXGXPXPTPPGXXPPPXGGXXPXRGGGXKPPP 907
+PP P PP PPP G PPP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -2
Query: 920 PPXXXGGVXPPPPGXGXPPPXGGEXPXGGXXXXP 819
PP PPPP PPP P G P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 773 PXKKKXXPPSPPXXXGXPXPTPPGXXPP 856
P PP PP P PTP PP
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 565 VPPPFXGXXXPPPXGGXXPPPPP 497
VPPP P P G P PPP
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Frame = +2
Query: 773 PXKKKXXPPSPPXXXGXPXPTPPGXXPP---PXGGXXPXRGGGXKPPPXXXGGG 925
P PP P G P PP PP P G P PP G
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +3
Query: 453 PPPPPPXKXXPPPXXGGGGGXXPPXGGGXXXPXKGGG 563
PP PPP + P P G PP P G
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 794 PPSPPXXXGXPXPTPPGXXPPP 859
PP PP G P+ P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 453 PPPPPPXKXXPPPXXGGGGG 512
PPPPPP PPP GG
Sbjct: 945 PPPPPP----PPPLVSAAGG 960
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.149 0.490
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,908
Number of Sequences: 5004
Number of extensions: 39869
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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