Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K16
         (1326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 783 KKXPPPPPPXXXG 821
           K  PPPPPP   G
Sbjct: 340 KPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 453 PPPPPPXKXXP 485
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 780  KKKXPPPPPPXXXG 821
            +++ PPPPPP   G
Sbjct: 1352 QQQPPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.149    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,427
Number of Sequences: 438
Number of extensions: 9310
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45744003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)