Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K15
(1275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 331 1e-91
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 330 2e-91
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 330 3e-91
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 1.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 7.3
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 7.3
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 7.3
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 7.3
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 331 bits (813), Expect = 1e-91
Identities = 152/229 (66%), Positives = 185/229 (80%)
Frame = +1
Query: 205 PSTGPHKLRACLPLVLFLRXRLKSALXGNAVLKIVXQRLIKVDGXVRPDPTYPAGFMDVV 384
PS GPHK R CLPL++FLR RLK AL G V I+ QRLIKVDG VR D T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 385 SIEQPNELFRLIYXVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 564
S+E+ E FRL+Y +KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 565 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 744
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHV 210
Query: 745 KDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAXK 891
KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 211 KDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 330 bits (811), Expect = 2e-91
Identities = 151/229 (65%), Positives = 185/229 (80%)
Frame = +1
Query: 205 PSTGPHKLRACLPLVLFLRXRLKSALXGNAVLKIVXQRLIKVDGXVRPDPTYPAGFMDVV 384
PS GPHK R CLPL++FLR RLK AL G V I+ QRLI+VDG VR D T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVI 90
Query: 385 SIEQPNELFRLIYXVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 564
S+E+ E FRL+Y +KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 565 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 744
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHV 210
Query: 745 KDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAXK 891
KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 211 KDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 330 bits (810), Expect = 3e-91
Identities = 151/229 (65%), Positives = 185/229 (80%)
Frame = +1
Query: 205 PSTGPHKLRACLPLVLFLRXRLKSALXGNAVLKIVXQRLIKVDGXVRPDPTYPAGFMDVV 384
PS GPHK R CLPL++FLR RLK AL G V I+ QRLIKVDG VR D T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 385 SIEQPNELFRLIYXVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 564
S+++ E FRL+Y +KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 565 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 744
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHV 210
Query: 745 KDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAXK 891
KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 211 KDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 822 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 697
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 7.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 576 QSQRFHPVRHCNYED 620
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 634 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 738
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 7.3
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 325 KVDGXVRPDPTYPAGFMDVVSIEQPNELFRLIYXVKGRFTIHRITPEEAKYKLCKVK-RV 501
K+ +R + +P + +I Q F + G + +I K LC V
Sbjct: 18 KLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDV 77
Query: 502 ATGPKNVPYLVTHDGR 549
T PKN Y+V GR
Sbjct: 78 HTDPKNTEYIVASGGR 93
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 789 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 610
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,116
Number of Sequences: 5004
Number of extensions: 70187
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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