Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K15
(1275 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 301 5e-82
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.009
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.33
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 30 3.1
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 5.3
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 5.3
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 7.0
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 7.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 301 bits (740), Expect = 5e-82
Identities = 144/229 (62%), Positives = 173/229 (75%)
Frame = +1
Query: 205 PSTGPHKLRACLPLVLFLRXRLKSALXGNAVLKIVXQRLIKVDGXVRPDPTYPAGFMDVV 384
P+ GPHKLR LPL LFLR RLK AL KI+ QR+++VDG VR +P GFMDVV
Sbjct: 30 PNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVV 89
Query: 385 SIEQPNELFRLIYXVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 564
+IE+ NE FR++Y KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYP
Sbjct: 90 AIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYP 149
Query: 565 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 744
DP +KVND+I +I+T KI D +KFE GNL +TGGRN+GRVG I RER PG+ DI+HI
Sbjct: 150 DPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHI 209
Query: 745 KDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAXK 891
KDS GH+FATR++NVF+IGKG KA +SLP G GIRL+IAEERDKR+A K
Sbjct: 210 KDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 38.7 bits (86), Expect = 0.009
Identities = 22/63 (34%), Positives = 25/63 (39%)
Frame = +3
Query: 693 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 872
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 873 QAH 881
+ H
Sbjct: 460 EHH 462
Score = 38.7 bits (86), Expect = 0.009
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 693 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 857
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.5 bits (83), Expect = 0.020
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +3
Query: 684 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 860
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 861 RGAGQAHRXQGRRA 902
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 35.1 bits (77), Expect = 0.11
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 732 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 881
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.1 bits (77), Expect = 0.11
Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 2/113 (1%)
Frame = +3
Query: 549 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACG-HHRVPRETSR 722
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 723 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 881
H H HG H H H G G H H P H G+ H
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHH 568
Score = 35.1 bits (77), Expect = 0.11
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = +3
Query: 663 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 833
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 834 RQGHPP---HHRRGAGQAH 881
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 33.5 bits (73), Expect = 0.33
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Frame = +3
Query: 549 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 716
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 717 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHHRRGAGQAH 881
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 33.1 bits (72), Expect = 0.43
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +3
Query: 693 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 872
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 873 QAHRXQG 893
AH G
Sbjct: 690 GAHHEHG 696
Score = 32.3 bits (70), Expect = 0.76
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Frame = +3
Query: 693 HHRVPRETSRLLRHCAHQGLHGT----HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 860
HH E H H G HG+ H HE H+ H G H H HH
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHH--GEHGVHHGHHG 617
Query: 861 RGAGQAHRXQG 893
G G H G
Sbjct: 618 AGYGAHHGHHG 628
Score = 29.1 bits (62), Expect = 7.0
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +3
Query: 693 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 869
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 870 GQAHRXQ 890
H +
Sbjct: 515 HHGHHGE 521
Score = 28.7 bits (61), Expect = 9.3
Identities = 26/115 (22%), Positives = 35/115 (30%), Gaps = 4/115 (3%)
Frame = +3
Query: 549 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 725
HH + + + H P H ++ ++G H HG HH P
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGE-------HHHAPAHHGHH 542
Query: 726 LRHCAHQGLHG---THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 881
H H G HG + H H+ H G H G H G H
Sbjct: 543 GEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGH 597
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.33
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = +3
Query: 732 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRXQG 893
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.77
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +3
Query: 732 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 857
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 21.4 bits (43), Expect(2) = 0.77
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +3
Query: 846 PPHHRRGAGQAHRXQGRRA 902
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 123 PSVXXCSASTLPKXGXXAXLGGVSAPXPVNRSPQVARVLAPGAFPEASSEVCFXR 287
PS S S+ + G + G P+N +P+ ++ G P SS VC R
Sbjct: 753 PSSLNSSTSSYKRPGRSSKTSGSGKLPPINPAPRRNHSMSAGETPRPSSIVCLPR 807
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 433 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 564
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 880 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 761
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 880 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 761
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 880 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 761
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 5.3
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3
Query: 880 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 761
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 651 LVYDHGRP*LGACGHHRVPRETSRLLRH 734
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 651 LVYDHGRP*LGACGHHRVPRETSRLLRH 734
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,771,693
Number of Sequences: 27780
Number of extensions: 440762
Number of successful extensions: 1307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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