Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K14
         (1311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.83 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.83 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   7.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.83
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 714 SSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTN 893
           ++ +SDS    T S+  ++  S  S   +   S+ SG  GRR  T    S+    P P +
Sbjct: 9   NAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFG--SSNEALPQPIS 66

Query: 894 SVAERVH 914
              ++ H
Sbjct: 67  KRKDKEH 73


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.83
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 714 SSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTN 893
           ++ +SDS    T S+  ++  S  S   +   S+ SG  GRR  T    S+    P P +
Sbjct: 9   NAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFG--SSNEALPQPIS 66

Query: 894 SVAERVH 914
              ++ H
Sbjct: 67  KRKDKEH 73


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 453 CATLNHMNRKQFYSA 497
           C+ LNHM R++FY +
Sbjct: 446 CSNLNHMMREEFYQS 460


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 733 VMFRRHCLMMGMKHSVLILKLSRKQCHKDLDRVVG 837
           ++ R HC ++G K   L+ ++    C++   R +G
Sbjct: 40  ILDRGHCDVIGKKIKELLPEVLNNHCNRCTSRQIG 74


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = -1

Query: 768 HSHHETMSAEH-HYQ 727
           H HH+T S +H HY+
Sbjct: 353 HHHHQTQSLQHLHYR 367


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 YQNVKEILLEIL 690
           +QN+KE++LE+L
Sbjct: 127 FQNLKEVMLEVL 138


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +1

Query: 655 YQNVKEILLEIL 690
           +QN+KE++LE+L
Sbjct: 127 FQNLKEVMLEVL 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,122
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45143688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)