Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_K12
         (1375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   0.004
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.5  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 117 STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 281
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 1029 PAXSPLRXXGGPXPXPPPXXFPXXGXXXXPP 1121
            P   P    GGP P PPP      G    PP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,722
Number of Sequences: 5004
Number of extensions: 43442
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 759101996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)