Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K12
(1375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 38 0.025
05_07_0219 - 28474661-28475146,28475979-28476644 33 0.53
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.70
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 32 0.92
02_05_0686 - 30900748-30902167,30903442-30904742 32 1.2
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 31 2.8
05_04_0241 - 19332540-19332635,19332931-19333023,19333743-193337... 31 2.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 2.8
02_05_0584 - 30135768-30135790,30136104-30136866 29 8.6
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 29 8.6
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 37.5 bits (83), Expect = 0.025
Identities = 34/132 (25%), Positives = 38/132 (28%), Gaps = 2/132 (1%)
Frame = -3
Query: 1322 GXXXGPPXXNFXXPPKXPXXXXPXN--PGXXXXGXKXXFTRGGXXXGXFPXKXXRXGXXG 1149
G GP PP P + PG G GG G P + G G
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Query: 1148 GXXXPXPXLGGXXXXPGXGKPXRGGXWXXPPXXPKGGXGGXGXPXXXXXXXXXXGXXGXP 969
G P G G+P GG P GG GG G P G G
Sbjct: 155 GALARPP---GGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGG 211
Query: 968 GXTAGIXXSPVG 933
G G +G
Sbjct: 212 GGEGGAPERVIG 223
Score = 32.7 bits (71), Expect = 0.70
Identities = 27/92 (29%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Frame = -2
Query: 1209 PGGXPXRXXPGXGXPXGXXXGXXGPXPXXGGXXPXPRX----------WETXPGGXMGXA 1060
PGG P G G P P GG PR PGG G A
Sbjct: 109 PGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGA 168
Query: 1059 PXXPEGGKXRXRXPGXRQGXEQXGGXXGXSRG 964
P GG PG G GG G + G
Sbjct: 169 LGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPG 200
Score = 30.7 bits (66), Expect = 2.8
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -3
Query: 1151 GGXXXPXPXLGGXXXXPGXGKPXRGGXWXXPPXXPKGGXGGXG 1023
GG P P LGG G +P GG PP P G GG G
Sbjct: 93 GGGGAPGP-LGG-----GGARPPGGGGGGGPPSLPPGAGGGGG 129
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 33.1 bits (72), Expect = 0.53
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 191 KEERSSGNSQSKRRCTFENSTI*CRPHGHFENFLKKITXARQSSKLV 51
K + +SGN + K R F S I CR G F +F + R+ +K V
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGKFGHFADECDEPRKMAKAV 368
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.70
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = +2
Query: 1019 GXRXRXFPPSGKXGAXPXXPPGXVSXXRGXGXSPPXXGXGPKXPXXXPXGXPXPGXXRXG 1198
G R PP+ G P PP G +PP P P P PG
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLP 1227
Query: 1199 XPPG 1210
PPG
Sbjct: 1228 APPG 1231
>09_06_0374 + 22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 32.3 bits (70), Expect = 0.92
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = +2
Query: 1049 GKXGAXPXXPPGXVSXXRGXGXSPPXXGXGPKXPXXXPXGXPXPGXXRXGXPPG 1210
GK P PPG + G PP GP P P G PG R G P G
Sbjct: 415 GKPRRPPRRPPGLARPRKPLGRRPP----GPARP-GKPLGRRPPGPARPGKPLG 463
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 1.2
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +2
Query: 1040 PPSGKXGAXPXXPPGXVSXXRGXGXSPPXXGXGPKXPXXXPXGXPXPGXXRXGXPP 1207
PP K P P G G PP GP P P PG + G PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP-----PPPPGGKKGGPPP 379
>09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 30.7 bits (66), Expect = 2.8
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 1115 SPPXXGXGPKXPXXXPXGXPXPGXXRXGXPP 1207
SPP G GP P P P P G PP
Sbjct: 243 SPPPPGQGPVLPRDAPPMPPPPSPPNPGAPP 273
>05_04_0241 -
19332540-19332635,19332931-19333023,19333743-19333790,
19333907-19333999
Length = 109
Score = 30.7 bits (66), Expect = 2.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 105 MSVWSTLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGK 248
M +W L R V +R + + V G F ER + ++E N G+
Sbjct: 1 MGLWDALYRVVMRRNAVYVTFVVAGAFAGERAVDYGVHKVWEMNNIGE 48
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1029 PAXSPLRXXGGPXPXPPPXXFPXXGXXXXPPQXGXGXXXPPXXXXXG 1169
PA SP G P PPP P PP G G PP G
Sbjct: 336 PAPSPSAAGAGSGPPPPPP--PAAPAAPRPPGPGPGPPPPPGAAGRG 380
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 29.1 bits (62), Expect = 8.6
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +2
Query: 1103 GXGXSPPXXGXGP-KXPXXXPXGXPXPGXXRXGXPPG*NXIXXPXXXP 1243
G G +PP G G P P P PG G PP P P
Sbjct: 80 GAGGAPPSAGSGGFPFPLPFPLPLPAPGSPAAGAPPSSGSSGFPFPMP 127
>01_07_0239 + 42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 29.1 bits (62), Expect = 8.6
Identities = 26/97 (26%), Positives = 32/97 (32%)
Frame = -3
Query: 1307 PPXXNFXXPPKXPXXXXPXNPGXXXXGXKXXFTRGGXXXGXFPXKXXRXGXXGGXXXPXP 1128
PP N P + N G + + G P + + G GG P
Sbjct: 389 PPIQNPGQPHQIRPGQPMHNAPPVAAGPSHHYAKPRGPGG--PNRYPQGGNQGGYN---P 443
Query: 1127 XLGGXXXXPGXGKPXRGGXWXXPPXXPKGGXGGXGXP 1017
GG G G + G PP P GG GG G P
Sbjct: 444 NRGGQGGGYGSGPYPQQGR--GPPPYPGGGMGGAGGP 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,186,666
Number of Sequences: 37544
Number of extensions: 399372
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4341590196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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