Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_K11
(1276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 34 0.048
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.084
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 29 1.4
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 2.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 5.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 7.3
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 27 7.3
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 7.3
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 7.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 9.7
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 9.7
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.9 bits (74), Expect = 0.048
Identities = 30/123 (24%), Positives = 53/123 (43%)
Frame = +2
Query: 92 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 271
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 272 TEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 451
+KS+ D + +S + T T NP +++ + N L + + H
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLNSSPPNSLSSQPKHQEFHLFH 140
Query: 452 TTT 460
T T
Sbjct: 141 TPT 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.1 bits (72), Expect = 0.084
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Frame = +1
Query: 325 PAEAHRDSGEEPASGQRRCRSGES-PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 501
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 502 GEGKEQIPERHRELRSH*AEAHGNVRKEPAPHKG 603
GE P +H EL H H ++ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 29.1 bits (62), Expect = 1.4
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 26 FKISRIHSQSDRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATD---LKSQLE 196
+ + R HS + V T++ SP SSK FT S DT S + +D L S+ E
Sbjct: 585 YDLLRTHSLDENVNSPTSISSP-SSKSSPFTKTTS-KDTKSATTTDERPSDFIRLNSE-E 641
Query: 197 GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKS 292
TS LR T IV + A+ +Q S
Sbjct: 642 SVGTSSLRTSQTTSTIVSNDSSSTASIPSQIS 673
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 2.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 158 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 316
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 317 DSSQ 328
SSQ
Sbjct: 488 SSSQ 491
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 260 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 439
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 440 QM 445
+
Sbjct: 308 NL 309
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 276 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 145
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 383 RQRLCPEAGSSPESRCASAGSNQTSQCRRIKTSGSSQ 273
+QR+ PE S PE+ + +N +++ + TS + Q
Sbjct: 235 QQRINPETSSVPETPVGVSAANVSNESTELATSATQQ 271
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 595 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 735
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 143 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 310
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 311 KFDSSQLKHTETQEK 355
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 9.7
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +2
Query: 227 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 406
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 407 LLDGVEHFDKT 439
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 625 SLNHYFITVTRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYNGNPAWAMAAYSNPGFYS 804
+LN Y I+ + SP I +I PL + +GNP + + PG YS
Sbjct: 218 NLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPICFLDSAKKPGRYS 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,273,697
Number of Sequences: 5004
Number of extensions: 86655
Number of successful extensions: 284
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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